Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28840 518 / 0 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G07270 112 / 4e-27 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 100 / 7e-23 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT3G04710 65 / 3e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G02620 63 / 2e-10 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 62 / 3e-10 Ankyrin repeat family protein (.1) AT5G60070 62 / 3e-10 ankyrin repeat family protein (.1) AT5G07840 57 / 9e-10 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT3G12360 60 / 1e-09 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 60 / 1e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016561 [exp] 723 / 0 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10027441 [exp] 117 / 6e-29 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10005754 [exp] 117 / 1e-28 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10015503 [exp] 84 / 3e-17 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10019974 [exp] 83 / 4e-17 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10014410 [exp] 67 / 9e-13 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10014522 [exp] 66 / 1e-11 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10018958 [exp] 63 / 1e-11 AT5G07840 228 / 3e-77 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) Lus10003748 [exp] 65 / 4e-11 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238800 [exp] 584 / 0 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 583 / 0 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.015G141400 [exp] 115 / 4e-28 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 105 / 8e-25 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 94 / 1e-20 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 91 / 1e-19 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.007G099600 [exp] 64 / 9e-11 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G054800 [exp] 63 / 9e-11 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.007G145200 [exp] 64 / 1e-10 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.005G219201 [exp] 62 / 2e-10 AT3G04710 221 / 9e-68 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10040829 pacid=23157710 polypeptide=Lus10040829 locus=Lus10040829.g ID=Lus10040829.BGIv1.0 annot-version=v1.0 ATGAAAATGAAAATTAATATTCTGACGCCACTAATGTTGGCTGCAATGCATGGGAAGATCTCCTGTTTGACGATGCTCATCGAAGCAGGAGCAAATATAT TGAAGTTTGATTCGCTAAATGGACGGACTTGCTTGCACTATGCGGCTTACTATGGCCATTCTGATTGTCTTCAAGTCATTCTTTCCACTGCTCAGTCCAG CCCTGTTGCTGCATCCTGGGGATATGCAAGATTTGTTAATATTAGGGACGGCAGAGGAGCCACACCACTGCATTTAGCTGCACGTCAAAGGAAGCCTGAG TGTGTTCATATCTTGTTGGACAATGGTGCACTTGTTTGTGCTTCTACTGGAGGATATGGCTGTCCAGGAAGCACTCCTCTTCATCTAGCGGCTAGAGGAG GGTCCCTTGATTGCATCCGGGAATTGTTAGCGTGGGGTGCTGATCGTCTTCAGAGAGATGCATCTGGGAGGATTCCTTATGGAGTTGCCTTGAAGCACAA ACAATCAGACTGTGCAGCACTATTAAATCCTTCATCAGCAGAGCCTCTTGTTTGGCCTTCTCCTTTGAAGTTCATCAGCGAGCTTAACCAAGAAGCTAAA GCGTTGTTGGAACGTGCCCTGATGAAGGCGAACCGTGAACGAGAAAAGACCATCTTCAAGGGATCATCTGTTTGCAAGGACCAATCGTCACCACAAATTA CCGAGATCGAGATAGATGACAATGCATCCAATATAAGCGATACCGAGCTATGCTGCATCTGCTTCGAGCAAGTATGCACGATCGAAGTCCAGAACTGTGG ACACCAAATGTGCGCAAATTGCACACTGGCCCTCTGCTGCCACAACAAGCCGAACCCAACAACAGCATCACTGACACCTCCAGTATGCCCGTTCTGTCGA AGCACTATCGCTCGTCTCGTTGTTGCAAGAGTCAAGAACTGTTCCGAAATCGATCCTGATCAGGATCTCGGAGAAGGTTTCGACTCCCCGAAGCTGAGGA AGTCGTGGAAGTCGAGAAACCTGAGCGAAGGAAGCAGCAGCTTCAAGGGTCTGTCAGCAAACTTGGGCTCGTTTGGGAAAATGGGTGGCCGTGGCTCAGG AAGGATTGCAGCAGATAATGAGTGGATGGACAAACAATGA
AA sequence Show only first row Show all	>Lus10040829 pacid=23157710 polypeptide=Lus10040829 locus=Lus10040829.g ID=Lus10040829.BGIv1.0 annot-version=v1.0 MKMKINILTPLMLAAMHGKISCLTMLIEAGANILKFDSLNGRTCLHYAAYYGHSDCLQVILSTAQSSPVAASWGYARFVNIRDGRGATPLHLAARQRKPE CVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYGVALKHKQSDCAALLNPSSAEPLVWPSPLKFISELNQEAK ALLERALMKANREREKTIFKGSSVCKDQSSPQITEIEIDDNASNISDTELCCICFEQVCTIEVQNCGHQMCANCTLALCCHNKPNPTTASLTPPVCPFCR STIARLVVARVKNCSEIDPDQDLGEGFDSPKLRKSWKSRNLSEGSSSFKGLSANLGSFGKMGGRGSGRIAADNEWMDKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	0	1
					Lus10010597 [exp]	1.4	0.8251
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	2.4	0.8250
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	6.0	0.8116
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	8.1	0.7891
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	8.1	0.8012
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10008239 [exp]	8.4	0.8024
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	10.1	0.7558
AT5G53220			unknown protein		Lus10039326 [exp]	10.2	0.7638
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	11.4	0.7947
AT3G22530			unknown protein		Lus10000009 [exp]	11.8	0.7679

Compare expression of checked genes

Lus10040829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.