Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53540 168 / 3e-54 HSP20-like chaperones superfamily protein (.1) AT5G59720 168 / 4e-54 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 167 / 5e-54 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 159 / 2e-50 HSP20-like chaperones superfamily protein (.1) AT1G07400 152 / 6e-48 HSP20-like chaperones superfamily protein (.1) AT1G59860 137 / 3e-42 HSP20-like chaperones superfamily protein (.1) AT4G10250 95 / 7e-25 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G37670 76 / 3e-18 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT5G12020 61 / 3e-12 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 59 / 2e-11 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009085 [exp] 169 / 3e-54 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 147 / 5e-46 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 139 / 1e-42 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 138 / 3e-42 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 136 / 2e-41 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 135 / 3e-41 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 91 / 5e-23 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 90 / 9e-23 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 87 / 8e-22 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062300 [exp] 171 / 4e-55 AT5G59720 198 / 9e-66 heat shock protein 18.2 (.1) Potri.008G062350 [exp] 171 / 4e-55 AT5G59720 196 / 3e-65 heat shock protein 18.2 (.1) Potri.010G195700 [exp] 166 / 3e-53 AT5G59720 190 / 1e-62 heat shock protein 18.2 (.1) Potri.001G238700 [exp] 163 / 3e-52 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 153 / 2e-48 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 149 / 1e-46 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 146 / 1e-45 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 146 / 1e-45 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 142 / 4e-44 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 140 / 4e-43 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10040830 pacid=23157946 polypeptide=Lus10040830 locus=Lus10040830.g ID=Lus10040830.BGIv1.0 annot-version=v1.0 ATGTCGCTAATTCCAAGCATCTTCGGCACCGGCAGGAGGAGCAACATCTTCGATCCCTTCTCCCTCGACATCTGGGACCCCTTCGATGGAATCCTCGCCA ACTCCGGCTCCAATTCCTCCTCCTCCTCAGCAGCGATGGCGAACGCGAGGATCGACTGGAAGGAGACGGCGGACGCGCACGTGTTCAAGGCGGACGTGCC GGGGCTGAAGAAGGAGGAGGTGAAGGTTGAAGTGGAGGAAGGGAAGATTCTGCAGATCAGCGGGGAGAGGAGCAAAGAGGAAGAGGAGAAGAACGACAAG TGGCACCGGGTGGAGAGGAGCAGCGGGAAGTTCGTGAGGAGGTTCCGGCTGCCGGAGAATGCGAAGGTGGATGAGGTGAAGGCGGCGATGGAGAATGGGG TGCTGACTGTTACGGTTCCCAAGGAGGAAGAAAAGAAGCCTGAGGTTAAGAATGTCATGATCTCTGGTTAG
AA sequence Show only first row Show all	>Lus10040830 pacid=23157946 polypeptide=Lus10040830 locus=Lus10040830.g ID=Lus10040830.BGIv1.0 annot-version=v1.0 MSLIPSIFGTGRRSNIFDPFSLDIWDPFDGILANSGSNSSSSSAAMANARIDWKETADAHVFKADVPGLKKEEVKVEVEEGKILQISGERSKEEEEKNDK WHRVERSSGKFVRRFRLPENAKVDEVKAAMENGVLTVTVPKEEEKKPEVKNVMISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	0	1
AT5G35320			unknown protein		Lus10011963 [exp]	1.4	0.9414
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	3.2	0.8995
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	3.5	0.9409
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	8.4	0.9117
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	8.4	0.8894
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	9.0	0.9275
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	9.3	0.8586
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	10.8	0.9185
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	12.6	0.9151
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	13.1	0.9022

Compare expression of checked genes

Lus10040830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.