Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27640 679 / 0 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 676 / 0 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1) AT1G49015 196 / 4e-59 DPP6 N-terminal domain-like protein (.1) AT1G73180 56 / 6e-08 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016562 [exp] 820 / 0 AT5G27640 1072 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10026904 [exp] 807 / 0 AT5G27640 1167 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10020098 [exp] 804 / 0 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10038840 [exp] 42 / 0.0003 AT3G16380 62 / 2e-11 poly(A) binding protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015200 [exp] 741 / 0 AT5G27640 1168 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.006G267500 [exp] 728 / 0 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08662 [flax] [poplar] eIF2A Eukaryotic translation initiation factor eIF2A CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040831 pacid=23157711 polypeptide=Lus10040831 locus=Lus10040831.g ID=Lus10040831.BGIv1.0 annot-version=v1.0 ATGCTCTCAGATACGATTCTGTTTAGACTATGCTCAGTTGCTCATTATTCTCGTTTGGCGTTTTTGTCCAATGTTAGTGATGACGATGATATTCTCCAAG AGGACCAGCAAGATTTCGATTCTGGTTTCGGAAACATCATTGTGGTGGATAATCTCCCTGTGGTTCCTTTTGAGAAATGCAAGAAGCTTGAAAGAGTCAT AAGGAAATTTTTCTCTAAAACTGGGATTATCAAGGAAGATGGTCTCTGGATGCCAGTTGATCCCGATATCAAGGGAACCAATGGTTATTGCTTCATTGAG TACAACACTCCGCAGGAAGCTGAGCTTGCTAAAGAGATACTCAACGGGCGTAAGCTGGACAAATCCCACTTTTTTGTTGTCAATATGTTAGATGACTTCT ATAAGTATACGATAGTTCCAGATGAATCGGCAGCTCCGGACTGGTTATTTATTGATTTTTCATTGGCTATGTCTAGTGTAGTTTTAGGCAGAACTTTGCC TGACCCAGTATACAAGCGGGCTTACTGGACAGAGAGCTTTGTTCAGTGGTCTCCACTTGGAACGTACCTAGCCACAGTTCATAGGAAAGGGGCAGCTGTT CGGGGTGGTGCATCATCTTTCAACCGGCTGATGCGTTATGCTCATCGTCAGGTTAAAATGATCGACTTTTCCCCGGGGGAGAAATACTTGGTAACATACA GTAGTCATGAACCAAGCAATCCACCGGATGCAAATAGGGTGTTAATCAATATTTTTGATGTGAGGACTGCTAAAGTCAGGAAGGATTTTAAAGGAAGTGC GGATGATTTTACAGCTAATGGTGTCATGGGTGTTCAATTGCCAGTTTTCCGCTGGGGTGGCGGAAAGGGTGACAACTACTTTGCAAAATTGGGTAAAAAT ATGATCTCTGTCTATGAAACTGAAACTTTCAGTCTCATTGATAAGAAATCTATAAACGTTTTCGTGGACTTCACTTGGTCTCCTGCCGATCCGATTATTG CTCTCTTCGTCCCAGAGCTTAGCGGTGGTAACCAGCCGGCTAGGGTCAGTCTTGTTCAAATTCCCTGTAAAGAGGAACTGAGAGAGAGGAATCTTTTTAG TGTAAAAGACTGCACAATGTACTGGCAAAGTGCTGGGGACTACCTTGCCGTGCAGGTGGACAGATGCACAAAGACCAAGAAAAACACGTATACAGGCTTT GAGCTTTTCAGAATCAAAGAACGCGATATTCCCATTGAGGTTCTGGAGCTTGAAAATAAAAACGACAAGATCATCGCTTTTGCCTGGAAACCAAAGGGTC ACAGGTTTGCGGTTATTCACGGCGATGGTCCTAGACCTGACGTAAGCTTTTATTCAATGAAGACCGCTCAGCACTCAGGCAGAGTCTGCAAGCTTACAAC TCTGAAAGGAAAACAGGCAAATGCTCTTTTCTGGTCCCCTTTGGGGCATTACTTAATAGTCGCAGGAATGAAGGGTTTCAATGGTCAGTTGGAATTTTAT AATGTTGATGAGCTTGAAACCATGGCCACACTGCTGAGCACTTTATGGGGACGGATGTCATATGGGATCCTGCTGGAAGGTATGTCGCAACAGCAGTAA
AA sequence Show only first row Show all	>Lus10040831 pacid=23157711 polypeptide=Lus10040831 locus=Lus10040831.g ID=Lus10040831.BGIv1.0 annot-version=v1.0 MLSDTILFRLCSVAHYSRLAFLSNVSDDDDILQEDQQDFDSGFGNIIVVDNLPVVPFEKCKKLERVIRKFFSKTGIIKEDGLWMPVDPDIKGTNGYCFIE YNTPQEAELAKEILNGRKLDKSHFFVVNMLDDFYKYTIVPDESAAPDWLFIDFSLAMSSVVLGRTLPDPVYKRAYWTESFVQWSPLGTYLATVHRKGAAV RGGASSFNRLMRYAHRQVKMIDFSPGEKYLVTYSSHEPSNPPDANRVLINIFDVRTAKVRKDFKGSADDFTANGVMGVQLPVFRWGGGKGDNYFAKLGKN MISVYETETFSLIDKKSINVFVDFTWSPADPIIALFVPELSGGNQPARVSLVQIPCKEELRERNLFSVKDCTMYWQSAGDYLAVQVDRCTKTKKNTYTGF ELFRIKERDIPIEVLELENKNDKIIAFAWKPKGHRFAVIHGDGPRPDVSFYSMKTAQHSGRVCKLTTLKGKQANALFWSPLGHYLIVAGMKGFNGQLEFY NVDELETMATLLSTLWGRMSYGILLEGMSQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025795 [exp]	1.7	0.8538
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	3.3	0.8776
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033341 [exp]	4.5	0.8261
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	6.6	0.8482
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	10.2	0.8417
AT5G49530			SIN-like family protein (.1)		Lus10024027 [exp]	12.5	0.8226
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	12.6	0.8582
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	13.7	0.8409
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	14.5	0.8409
AT5G22450			unknown protein		Lus10004878 [exp]	16.4	0.8436

Compare expression of checked genes

Lus10040831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.