Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14255 72 / 1e-13 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G41060 69 / 9e-13 DHHC-type zinc finger family protein (.1.2) AT5G04270 59 / 6e-10 DHHC-type zinc finger family protein (.1) AT3G56930 60 / 7e-10 DHHC-type zinc finger family protein (.1.2) AT3G56920 59 / 2e-09 DHHC-type zinc finger family protein (.1) AT3G48760 58 / 4e-09 DHHC-type zinc finger family protein (.1) AT3G26935 57 / 5e-09 DHHC-type zinc finger family protein (.1) AT2G40990 57 / 9e-09 DHHC-type zinc finger family protein (.1) AT5G20350 54 / 6e-08 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G05070 51 / 5e-07 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016564 [exp] 345 / 4e-118 AT3G18620 50 / 1e-06 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 64 / 1e-11 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10012455 [exp] 64 / 4e-11 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008037 [exp] 63 / 1e-10 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10024377 [exp] 62 / 1e-10 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 61 / 6e-10 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10038108 [exp] 60 / 8e-10 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012096 [exp] 59 / 1e-09 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10016754 [exp] 59 / 2e-09 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029800 [exp] 372 / 2e-129 AT2G14255 62 / 2e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G287000 [exp] 65 / 2e-11 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.017G063800 [exp] 63 / 8e-11 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G061800 [exp] 63 / 1e-10 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 60 / 8e-10 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.015G101900 [exp] 59 / 1e-09 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 58 / 4e-09 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 56 / 1e-08 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.016G025200 [exp] 54 / 5e-08 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.014G153600 [exp] 54 / 5e-08 AT5G41060 230 / 2e-71 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040833 pacid=23157838 polypeptide=Lus10040833 locus=Lus10040833.g ID=Lus10040833.BGIv1.0 annot-version=v1.0 ATGCTGCATTTGAATAATCGGAGGGAAAAACTCCGGCTATCTCCGTTTCAGTTAGCTGGACGATCCACGATTTCGTGCATCTTCGTCTTATTCACTCAGT TCTTGCTCTCTCTAGTACCTCGGTTCTTCCCGGCTTCCTCTCTTATCCTCCAGTTTATGCTCTCAGTGGTAGTCCTGCTGCTGGTGATTGGTTTTGGGAG ATGGTGTAGGCGGCTTATCGGCGTCTCCGCTTCGGCTCCAGCTCTGGTTGTCTTCAATACTCTCTTCGTTTGGGGAGTTTACTTCGTCTTTGTTCGACCT GCTGTATCCCTTTTTGTTGATGTTATTTTCAATGGAGAGATGGTTCTGGTTTTCCTTGGCTTGTACAGAATTGTGTCAAGTGATCCTGGTATGGTAGCGA ACGAATTTGCAGGGACGGATGAGCTCGTCGAAACTGCTAGAGAATGTGACGATCAGGTTGAGGGTGCTGTACTGCCAAATAGGGTAAGATACTGCAAGAG CTGCGAAATATACGTTCAAGGTTTTGACCACCATTGTCCTGCTTTTGGGAACTGCATAGGATATAAGAATCATGTCTTCTTCATGGTTCTTCTTTTTGGA TTTCTTGCAACTGAAGCTTCCTACTTAGCATGCTGTTTTAAGGTTTCCAGAGAATACTGGGTGCTAGACAAGCATATATTTCAGAGTGATCTAGAAAGGT GTTTGCTTGTGAGCTCAATGCTCTTCTCTTTTCTTCAAGTGTTATGGCAGGTGTTCTTTATGATGTGGCACATTTACTGCATTTGTCTCAACATTCGGAC TGATGAGTGGGTGAACTGGAAGAAGTATCCAGAATTTTGCTTCATTGGTCAGCCAGAACCAGGGGAAAGCAAAACTGTGGTACGGTTCAGAAACCCTTAC GATAAGGGCATGGCTGCAAATCTGCAGGAGTTCCTCGCAACGGGCATTCCACAACACTGCCAGATTTCCACCTCCTAG
AA sequence Show only first row Show all	>Lus10040833 pacid=23157838 polypeptide=Lus10040833 locus=Lus10040833.g ID=Lus10040833.BGIv1.0 annot-version=v1.0 MLHLNNRREKLRLSPFQLAGRSTISCIFVLFTQFLLSLVPRFFPASSLILQFMLSVVVLLLVIGFGRWCRRLIGVSASAPALVVFNTLFVWGVYFVFVRP AVSLFVDVIFNGEMVLVFLGLYRIVSSDPGMVANEFAGTDELVETARECDDQVEGAVLPNRVRYCKSCEIYVQGFDHHCPAFGNCIGYKNHVFFMVLLFG FLATEASYLACCFKVSREYWVLDKHIFQSDLERCLLVSSMLFSFLQVLWQVFFMMWHIYCICLNIRTDEWVNWKKYPEFCFIGQPEPGESKTVVRFRNPY DKGMAANLQEFLATGIPQHCQISTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	0	1
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	2.0	0.9330
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	3.7	0.9265
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	6.5	0.9260
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	8.0	0.9109
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	9.2	0.9069
AT5G66240			Transducin/WD40 repeat-like su...		Lus10021575 [exp]	9.4	0.8981
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	11.2	0.9220
					Lus10034398 [exp]	12.6	0.9246
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	15.8	0.9165
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	18.5	0.9198

Compare expression of checked genes

Lus10040833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.