Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 851 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 743 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 613 / 0 ATPUB14 plant U-box 14 (.1) AT1G23030 455 / 1e-152 PUB11 ARM repeat superfamily protein (.1) AT5G42340 434 / 6e-144 PUB15 Plant U-Box 15 (.1) AT1G71020 410 / 4e-137 ARM repeat superfamily protein (.1.2) AT3G07360 265 / 4e-81 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 270 / 1e-80 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G23140 259 / 1e-75 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 236 / 6e-68 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016565 [exp] 1249 / 0 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 660 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 469 / 3e-157 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 461 / 3e-154 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10038699 [exp] 440 / 1e-147 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 431 / 6e-143 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 432 / 5e-133 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 361 / 3e-115 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 348 / 9e-111 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029600 [exp] 1007 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 983 / 0 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 676 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 658 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.002G009900 [exp] 499 / 4e-169 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 457 / 6e-153 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.004G205000 [exp] 434 / 4e-144 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 426 / 1e-140 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 422 / 3e-139 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 345 / 3e-109 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10040834 pacid=23157578 polypeptide=Lus10040834 locus=Lus10040834.g ID=Lus10040834.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAACAGAAGGAGAAGAAGAAGACGACCAGCAAGGAAGAGGCGGCACCAAGGCCGCTGATTCGGACCCTGATCGATACGGTGAACGACATAG CTTCGATCTCTGACTACAGGTCCACGGTCAAGAAGCAGTACTGCAACTTGGCGAGGAGGTTGAAGCTCTTGACCCCATTGTTCGAGGAAATCAGGGAGTG CAAAGATGCGATTCCTGATGAGACCGTTGATGCTCTCGTCTCTTTGAAAATCGCTCTCGATTCCGCTAAGGACCTGCTTAGATTCGGCTGCGATGCCAGC AAGATTTACCTGGTCTTGGAGAGGGAGGACATAGTGGTTAAATACCACGAGGTGACGGATCAGTTAGAACAAGCTTTAGGTGGAATTTCTTTCGAAAATC TGGACATATCAGATGAAGTTAAAGAACAGGTCGAGCTTGTCCTTGCCCAGTTCAAGAGAGCGAAAGGGAGATTCGATTCTCCAGATTTGGGGCTCTATTT AGATCTCTTTAAGCTCTACGGCAACGATAATGATCCCTTACCAGATCCTGATGTCCTAAGAAGGTTGTCCGAGAAGTTACAACTGACCGGGATCGACGAG CTTACACAAGAGTCACTTGCTTTGCATGAGATGGTTTCTGCTAGCGGTGGAGATCCTGGGGAGAACATAGAGAAGATGTCAATGCTACTTAAGAAAATCA AGGAATTCATTCAAACTGAAAATCCCGACTTGGATTCTTCTACCAGGGGAAAAGGTGTTCCTCCTAGTGGCAGTGGACAAGCTTCCATTGAGGGGAATCA CAAATCCCCCGTTATACCAGATGATTTCCGCTGTCCAATTTCTCTAGAGTTGATGAAGGATCCTGTCATTGTTTCAACGGGCCAGACCTACGAACGAGCC TGCATCGAGAAATGGCTGGAAGCAGGACACGCAACATGTCCGAAAACGCAACAATCTCTCATTAGCAACACACTCACTCCGAACTACGTATTACGCAGCC TAATAGCCCAATGGTGTGAATCAAACGGCATTGAACCGCCAAAACGACCCAGCAGTTCAAGATCCAGCAAAGCAACAAGCGCTTGCACACCCGCCGAACG TACCAAAATCGAACTACTCCTCCACAAGCTCACATCCGGAACTCCAGAAGACCGTCGATCTGCCGCAGGAGAAATCCGCCTCCTCGCAAAACGAAATGCC GATAATCGAGTCGCCATAGCCGAAGCTGGAGCAGTCCCTCTCCTCGTCGGCCTCCTCTCAACTCCCGATTCTCGAACTCAAGAACACGCTGTCACGGCTC TGCTTAATCTCTCCATATGCGAGGACAACAAAGGCAGGATCATATTGGCCGGAGCGGTCCCGGGGATTGTAAATGTGCTGAAGAAAGGTAGCATGGAAGC TCGGGAAAACGCGGCGGCCACACTTTTCAGCCTCTCCGTCGTTGATGAAAACAAGGTCACAATCGGATCCTCCGGAGCGATTCCACCGCTTGTGACTCTA CTAAGTGAAGGAACACAGAGAGGGAAGAAAGATGCTGCAACTGCATTATTCAACTTGTGTATTTATCAGGGGAATAAAGGGAAGGCGATTAGAGCAGGAG TTGTGCCGACGTTAATGATTCTCTTAACGGAGCGTGGTGGCAGCATGGTTGATGAAGCTCTGGCTATATTAGCGATATTGGCTAGCCATACTGAAGGGAA AGCGGCGATTGGAGCTGCGGAAGCAGTACCGGTTCTGGTTGAAGTTATCGGGAGCGGGTCGCCGAGGAATCGAGAGAATGCAGCTGCGGTTTTGGTGCAT CTTTGTTCTGGAGATCATAAGTACATGGTTGAGGCTCAGGAGCTTGGAGTTATGACGCCGTTGTTGAATTTGGCGCAGAACGGTACGGAACGAGGGAAGC GGAAAGCTCAACAGCTGCTTGACCGGATAAGTCGGTACATTGAGCAGCAGAAGCTTGCTCAACAAGCCGAATCCAACTCTCCCAATCCACCAGCAGAAGC CACAACGGATCCTGCATGCTGA
AA sequence Show only first row Show all	>Lus10040834 pacid=23157578 polypeptide=Lus10040834 locus=Lus10040834.g ID=Lus10040834.BGIv1.0 annot-version=v1.0 MEGEQKEKKKTTSKEEAAPRPLIRTLIDTVNDIASISDYRSTVKKQYCNLARRLKLLTPLFEEIRECKDAIPDETVDALVSLKIALDSAKDLLRFGCDAS KIYLVLEREDIVVKYHEVTDQLEQALGGISFENLDISDEVKEQVELVLAQFKRAKGRFDSPDLGLYLDLFKLYGNDNDPLPDPDVLRRLSEKLQLTGIDE LTQESLALHEMVSASGGDPGENIEKMSMLLKKIKEFIQTENPDLDSSTRGKGVPPSGSGQASIEGNHKSPVIPDDFRCPISLELMKDPVIVSTGQTYERA CIEKWLEAGHATCPKTQQSLISNTLTPNYVLRSLIAQWCESNGIEPPKRPSSSRSSKATSACTPAERTKIELLLHKLTSGTPEDRRSAAGEIRLLAKRNA DNRVAIAEAGAVPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGRIILAGAVPGIVNVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTL LSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVVPTLMILLTERGGSMVDEALAILAILASHTEGKAAIGAAEAVPVLVEVIGSGSPRNRENAAAVLVH LCSGDHKYMVEAQELGVMTPLLNLAQNGTERGKRKAQQLLDRISRYIEQQKLAQQAESNSPNPPAEATTDPAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	1.7	0.8534
					Lus10005948 [exp]	2.0	0.8094
AT3G52500			Eukaryotic aspartyl protease f...		Lus10029408 [exp]	3.5	0.8020
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	3.9	0.8057
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	6.7	0.7960
AT1G17930			Aminotransferase-like, plant m...		Lus10033313 [exp]	6.9	0.7072
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	16.5	0.7219
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	17.3	0.7679
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	18.4	0.7806
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	18.5	0.7001

Compare expression of checked genes

Lus10040834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.