Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013984 [exp] 200 / 4e-64 ND / Lus10015405 [exp] 139 / 3e-42 ND / Lus10031183 [exp] 66 / 4e-13 ND / Lus10001105 [exp] 40 / 0.0005 AT3G06240 109 / 3e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114900 [exp] 49 / 4e-07 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 46 / 4e-06 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.017G012200 [exp] 40 / 0.0003 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 39 / 0.0008 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040835 pacid=23157674 polypeptide=Lus10040835 locus=Lus10040835.g ID=Lus10040835.BGIv1.0 annot-version=v1.0 ATGGTGGTGTACACACTTGGCACTGATACCTGGAGGCAGTTGGAAGATTTCTATCATCAAGTTGAGTTGAGTTTTTTCACTGACCGCTACAGGTACTCGA GTGGATTCGGTTTCTGGTTATGTTGGTCTCGGGCTGCAATGCTAGCGTTCGACTTTAGGACTGAGGTTTTCCATGTGGTAAAAAATCCGGTTCCTCTCCT TATCCTCGCAGAGGATATCAAAATTCTAATGTCTGGGGATTCGGTTGCTTTACTTGCTCAGCAAGTTGTTGGGAAACCTGGAGGGGAGTTTGATCTGTGG TTTTTGGATGAAGAACAATGGTGTTGGATCAAACAATCCACTGTTGTCCTTTTGGAATATCATGAAATGTTGTTTGGAGACTGGAGGAAAGTTGAGCTTG TGGTGTATGATCGTGATAGACATGTGTTGAGGTTGTTCGACCCTGCAACTAAAGCTACTAAAACGTTACTTCAAGGTTGTGATGATAATCTCTTTGATCA TGCCGTGTTTGCTTACAAAGATAGCTTGATGTCTGTGGGTGATGAGTTTCGATGA
AA sequence Show only first row Show all	>Lus10040835 pacid=23157674 polypeptide=Lus10040835 locus=Lus10040835.g ID=Lus10040835.BGIv1.0 annot-version=v1.0 MVVYTLGTDTWRQLEDFYHQVELSFFTDRYRYSSGFGFWLCWSRAAMLAFDFRTEVFHVVKNPVPLLILAEDIKILMSGDSVALLAQQVVGKPGGEFDLW FLDEEQWCWIKQSTVVLLEYHEMLFGDWRKVELVVYDRDRHVLRLFDPATKATKTLLQGCDDNLFDHAVFAYKDSLMSVGDEFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040835 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	1.4	0.9585
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	2.0	0.9547
AT2G29880			unknown protein		Lus10005028 [exp]	2.6	0.8275
					Lus10009381 [exp]	3.0	0.9126
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	3.3	0.7849
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	3.5	0.8570
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	3.5	0.7842
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	3.7	0.7666
AT5G19360		CPK34	calcium-dependent protein kina...		Lus10036050 [exp]	3.9	0.7661
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	4.0	0.8126

Compare expression of checked genes

Lus10040835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.