Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 137 / 8e-40 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G55370 132 / 1e-37 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G02460 130 / 3e-36 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 121 / 2e-33 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 117 / 1e-32 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT1G51700 102 / 1e-27 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 102 / 2e-26 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 100 / 3e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G21270 99 / 3e-26 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT4G38000 99 / 2e-25 DOF AtDof4,7 DNA binding with one finger 4.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016566 [exp] 228 / 7e-75 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 147 / 8e-43 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10005956 [exp] 134 / 4e-38 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 134 / 5e-38 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 102 / 1e-28 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10040305 [exp] 109 / 2e-28 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10002381 [exp] 103 / 1e-26 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10007774 [exp] 101 / 4e-26 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10033218 [exp] 100 / 2e-25 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238400 [exp] 160 / 1e-48 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.006G084200 [exp] 154 / 3e-46 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.010G205400 [exp] 153 / 1e-45 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.009G029500 [exp] 143 / 6e-42 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.008G055100 [exp] 126 / 4e-35 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.007G058200 [exp] 105 / 3e-27 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 104 / 3e-27 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 104 / 5e-27 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G018700 [exp] 103 / 7e-27 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 102 / 9e-27 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10040836 pacid=23157765 polypeptide=Lus10040836 locus=Lus10040836.g ID=Lus10040836.BGIv1.0 annot-version=v1.0 ATGGTTTTTTCTTCCATTCCAGTCTACTTAGATCCTCCCAATTGGCATCATCATCACCACCAGTCTGCCAACCAATTGGTACAGCATGACCAAGGAGGAG TAGGAGGAGGAGCTTCTGCTTCGTATGATGCTCCTCCTCTTCCTCAGCATCATCAACAACACCAACTTCCTCCTTTGCCGACACAGCAGATGGTGCCACA TGGAGGAGGAGCAGTTGGAGCGGCTTCGATCCGGCCTGGCTCGATGGCCGATCGAGCCAGGCAGGCGAAAATACCCCAGCCTGAGCCGGGGCTGAAGTGC CCTAGGTGTGAGTCTACCAACACCAAGTTCTGCTACTTCAATAACTACAACCTCACTCAGCCACGTCACTTCTGCAAGACCTGCCGCCGCTACTGGACCA AAGGAGTGGCCCTCCGAAAAGTCCCCCTTGGAGGCGGGTTGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN CGCGAGACGGCGGCGGGGAATTTATACGGTAGCTTCCAGAACGAAGGAATGA
AA sequence Show only first row Show all	>Lus10040836 pacid=23157765 polypeptide=Lus10040836 locus=Lus10040836.g ID=Lus10040836.BGIv1.0 annot-version=v1.0 MVFSSIPVYLDPPNWHHHHHQSANQLVQHDQGGVGGGASASYDAPPLPQHHQQHQLPPLPTQQMVPHGGGAVGAASIRPGSMADRARQAKIPQPEPGLKC PRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTKGVALRKVPLGGGLAXXXXXXXXXXXXXXXXXXXARRRRGIYTVASRTKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	0	1
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	2.2	0.7587
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	5.9	0.8413
					Lus10042115 [exp]	7.5	0.7133
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	9.9	0.7427
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	11.5	0.7587
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	13.5	0.7874
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	14.2	0.7869
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	14.7	0.7456
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	23.1	0.7679
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	23.4	0.6704

Compare expression of checked genes

Lus10040836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.