Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15680 57 / 2e-08 F-box family protein (.1) AT3G23950 52 / 8e-07 F-box family protein (.1) AT5G07610 47 / 3e-05 F-box family protein (.1) AT3G28223 46 / 4e-05 F-box family protein (.1) AT3G26010 46 / 5e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G49990 45 / 0.0001 F-box family protein (.1) AT5G18160 45 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT1G46984 44 / 0.0003 F-box family protein (.1) AT2G40925 44 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT1G47300 43 / 0.0003 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013986 [exp] 825 / 0 ND 55 / 7e-08 Lus10013987 [exp] 681 / 0 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10007302 [exp] 645 / 0 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10003349 [exp] 640 / 0 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10007303 [exp] 513 / 0 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10040816 [exp] 477 / 5e-165 ND / Lus10013907 [exp] 455 / 2e-157 ND / Lus10002769 [exp] 426 / 5e-148 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10016522 [exp] 440 / 7e-147 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 103 / 2e-23 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 72 / 3e-13 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 67 / 9e-12 ND / Potri.005G043500 [exp] 63 / 2e-10 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.013G067800 [exp] 58 / 1e-08 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.004G000900 [exp] 55 / 7e-08 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.013G110300 [exp] 55 / 8e-08 AT5G07610 54 / 7e-08 F-box family protein (.1) Potri.013G109900 [exp] 53 / 3e-07 AT5G07610 61 / 7e-10 F-box family protein (.1) Potri.019G013900 [exp] 48 / 1e-05 AT5G03970 397 / 2e-136 F-box associated ubiquitination effector family protein (.1.2) Potri.003G215900 [exp] 48 / 1e-05 AT5G07610 101 / 2e-23 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10040838 pacid=23157885 polypeptide=Lus10040838 locus=Lus10040838.g ID=Lus10040838.BGIv1.0 annot-version=v1.0 ATGGCGACTCAGACCCGTAACTGCTCCTCCGATTGGGATGTGCCGCTAAGCCAATTCCATCGCCGTTCCGGAAAACGACAACGAATCAGTTCACAATCAA ACCTAATTCCTATCTGCAAACTCGGAGACAATCTCCTAGCAGAGATTCTGATTCGCCTCCCAAACCCTAGATCCGTCTGCCACTGTAAACTCGTCTGCAA GCGGTGGAGCTCCCTGATCTCCAGTCCTCGCTTCAATCGCCTTTTCCTTTCTCACCACCAGACTATGAACCATCCACCTATGCCGCTGGATCCATACAAG CTGAAATCGGTCATCCTCAGCTTTCTCCCTCCCATGCCTAGTACAGCTCGAGACGGTCTCAGAGTGTTGGATTGCAACAATGACTTGGTTCTATGCGGGT TTTGGGATATCGGTTGCGAGGATGGGGAACGTAGCAGAATGTACTTGGTCTGCAATCCATTTACGAAGCAGTGGATCGCTCTTCCTTTAGCGCCTAGGAA GCATGTGCGTTACATGTTGCCCTCTGCAAGGTTAGTCTGTGAACCCCGGAATTCTAATAAGCTTGATCTAGGAGGTGGAGATGAGCAAGAAGCATTTGTT TATTCTGAGTATCGCTTCCGTGTGGTTTGTGTTTATCAAATCCCTCTACCAACCCCTGCTATAAAGCTAGATGTATTTTGTTCCGATTCTGGAGAATGGA CCAAGGAAGCTATTGTCTGTGATGATCATGTTAGAACAGGTCCAAAAAGTGTAGTTTCGTGCAATGGGGAGGTGTTTTGGAAGTATTTTGTACGGAGTGA CCCGTTGAAGGCGTTTCTGGCTGTGTATAATCCTTTCCGCCCTGATATCCCTTCCACTCCCATTGATGTTTCTGCATTCCATGGGTATCATCATTGGTTT ATGTCCGCCTCTCAAGGGGCGTTGCACGTAATTGCAATAGAAAAGAAAACTGTACCTGTTCCTTCAAGCATCTGGAGACTAGAAGAAGACCGTAAATCGT GGAGGAAACAATACGAGGGGTTGGTGAACGAGACATCATCAAAGTGTGGTAACTATAAAGTTGAGGGCTGTTATCACCCCTATCTGCATCCACATAAGCC GGAAATTTTCTTCTTCAATCCGATTCCTTATAACGAGAACAATGCTATATTGTGCTGCGATTTGGGAAGGCAAGAGCAAGAGTTCATCGCTAAACTTGAA GGGCCGCCTGATGTCTACAACCTTCAGGTGTTCCAGCCAAGGGTTTCTTGCTGGGCTACACCAATTCCAAGGTATGAGGAGTTGCGAGGCATGTATGATG GAAGCTACAGCTTTTGGATTCAGGGCAGCAGGGAAGTAAAAGCAGACTTGCTGTTCAATACTTGCATGGATGATGTTATGAAATCAGCCTTTTACAACGA CTATCTAGAACTTTTCAATACAGAAGCATCTCTAAAGATGGTGGCTGAGATCATGCGGGGTAGGAAGAAGGAAATCCGCGAGCTTGCTTTGAGAACAAAG CCGCAGCATCGTTTTCCACTTGACGAGGAATTGGATGTACTAGAACCTGATTTGAAAATGATTGAAGCTGACATAGCCGCTATTGGGAAAAGGAAAGAAG AAGTGAAGCAGAGACTCGCGGTTGAAGCTGAAATACCCTCCACCTCTCGCGGTTGA
AA sequence Show only first row Show all	>Lus10040838 pacid=23157885 polypeptide=Lus10040838 locus=Lus10040838.g ID=Lus10040838.BGIv1.0 annot-version=v1.0 MATQTRNCSSDWDVPLSQFHRRSGKRQRISSQSNLIPICKLGDNLLAEILIRLPNPRSVCHCKLVCKRWSSLISSPRFNRLFLSHHQTMNHPPMPLDPYK LKSVILSFLPPMPSTARDGLRVLDCNNDLVLCGFWDIGCEDGERSRMYLVCNPFTKQWIALPLAPRKHVRYMLPSARLVCEPRNSNKLDLGGGDEQEAFV YSEYRFRVVCVYQIPLPTPAIKLDVFCSDSGEWTKEAIVCDDHVRTGPKSVVSCNGEVFWKYFVRSDPLKAFLAVYNPFRPDIPSTPIDVSAFHGYHHWF MSASQGALHVIAIEKKTVPVPSSIWRLEEDRKSWRKQYEGLVNETSSKCGNYKVEGCYHPYLHPHKPEIFFFNPIPYNENNAILCCDLGRQEQEFIAKLE GPPDVYNLQVFQPRVSCWATPIPRYEELRGMYDGSYSFWIQGSREVKADLLFNTCMDDVMKSAFYNDYLELFNTEASLKMVAEIMRGRKKEIRELALRTK PQHRFPLDEELDVLEPDLKMIEADIAAIGKRKEEVKQRLAVEAEIPSTSRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23950			F-box family protein (.1)		Lus10040838 [exp]	0	1
AT2G03640			Nuclear transport factor 2 (NT...		Lus10004644 [exp]	1.4	0.7846
AT5G28646		WVD2	WAVE-DAMPENED 2, TPX2 (targeti...		Lus10000016 [exp]	13.4	0.6957
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10000205 [exp]	23.2	0.7767
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	28.4	0.7465
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	34.9	0.7722
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	50.0	0.7688
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	50.5	0.7616
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	59.4	0.7572
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	61.2	0.7497
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10007854 [exp]	85.8	0.7501

Compare expression of checked genes

Lus10040838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.