Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 55 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016568 [exp] 308 / 7e-105 AT5G59350 166 / 1e-49 unknown protein Lus10005456 [exp] 79 / 1e-17 AT5G59350 92 / 7e-23 unknown protein Lus10023421 [exp] 74 / 6e-15 AT5G59350 115 / 2e-30 unknown protein Lus10040302 [exp] 70 / 2e-13 AT5G59350 117 / 3e-31 unknown protein Lus10005455 [exp] 41 / 0.0001 AT5G59350 54 / 1e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238300 [exp] 125 / 1e-33 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 121 / 3e-32 AT5G59350 161 / 1e-47 unknown protein Potri.008G054400 [exp] 81 / 2e-17 AT5G59350 91 / 8e-21 unknown protein Potri.010G206100 [exp] 81 / 2e-17 AT5G59350 111 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040839 pacid=23157810 polypeptide=Lus10040839 locus=Lus10040839.g ID=Lus10040839.BGIv1.0 annot-version=v1.0 ATGAAGTCCGCAAGCGGGTTGGTAATCGGGTTGAGCTTAGTGTTCGGGTGCCTCTTCCTAGCTCTCGCAGCAGAGCTCTACTACCTCCTATGGTGGAAGA AGCGAATCGTGAACCGAGAGAGCGAGACGGAAGAAGAAAGCCACACCTCCGGATCTTTAACCAGTAACAACACCGCCGCCAAGGAGTTCCTCCATTTCGT CTGCTGGAAGAAACCCGCCGCTCAACCTGAACCGAACCAACCCGACCTGGATCTCGAACGCGGCGACGACGGCGACGGGGAGGATAAGGACTCGCTGCTG ATAAAGTGCGGAGGTGGTGGAGAGGCGGAGGAGAGCGTGGAATCGGAGCTAATGCGGCTGCACAACCTGGCCGGGCCTCCGCGGTTCCTGTTCACGATTA AAGAAGAGGAGAAGGAGGATTTGGAATCCGAATGTGACAAGAGGAGCAGGAAAGGTTCCAGGACTCGGAGCTTGAGCGACATTCTAATGGCGGTCGATAA TTCCAGTACGACGGCGTTGTTTACTCCCTTAGCGTCCCCTCGCTGCACAAATCCTCTGGAGTCCTATAACCGCCAGGGATTCAATTTCAATCCCTTGTTC GAATCATCGACGACGGAAGTACTGAGATCCTCATCCTCGCCGCCGCCGAAGTTCGAGTTCTTGCGAGACGCGGAGGAGAAGCTGCTGAAAAGGCTTCTAG AAGAGTCCGAGAGGAAGCCTCTGTGTCCGGCGATGGCGGCGGAAGTCAGAGAAGGGTCGTTTCTAGGGTTTCTGTACGCGAAGAACAATTACAACAATAG AGAGGTTGCAGCAGTTCATCCTCTGCCTCAGGTGATTCCTTTGGCTTCTTCTTCGCTGTCGTCGTCGTCGTCGGCGATATCGGAACGTTATTAG
AA sequence Show only first row Show all	>Lus10040839 pacid=23157810 polypeptide=Lus10040839 locus=Lus10040839.g ID=Lus10040839.BGIv1.0 annot-version=v1.0 MKSASGLVIGLSLVFGCLFLALAAELYYLLWWKKRIVNRESETEEESHTSGSLTSNNTAAKEFLHFVCWKKPAAQPEPNQPDLDLERGDDGDGEDKDSLL IKCGGGGEAEESVESELMRLHNLAGPPRFLFTIKEEEKEDLESECDKRSRKGSRTRSLSDILMAVDNSSTTALFTPLASPRCTNPLESYNRQGFNFNPLF ESSTTEVLRSSSSPPPKFEFLRDAEEKLLKRLLEESERKPLCPAMAAEVREGSFLGFLYAKNNYNNREVAAVHPLPQVIPLASSSLSSSSSAISERY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10040839 [exp]	0	1
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	4.9	0.7291
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	10.4	0.7563
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	19.9	0.7304
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	32.9	0.6936
AT5G54300			Protein of unknown function (D...		Lus10018444 [exp]	39.0	0.6839
AT5G06270			unknown protein		Lus10021305 [exp]	44.5	0.6698
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	60.4	0.6930
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	97.9	0.6670
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	107.5	0.6519
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	110.5	0.6486

Compare expression of checked genes

Lus10040839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.