Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59340 104 / 2e-26 HD WOX2 WUSCHEL related homeobox 2 (.1) AT5G05770 91 / 9e-23 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT2G28610 92 / 7e-22 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT3G11260 90 / 7e-22 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT3G18010 92 / 2e-21 HD WOX1 WUSCHEL related homeobox 1 (.1) AT1G46480 89 / 5e-21 HD WOX4 WUSCHEL related homeobox 4 (.1) AT2G17950 89 / 2e-20 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 85 / 3e-19 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT1G20700 74 / 8e-16 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT4G35550 67 / 9e-13 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016569 [exp] 346 / 1e-120 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10024808 [exp] 94 / 2e-22 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10040219 [exp] 90 / 3e-21 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10028271 [exp] 89 / 7e-21 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 89 / 9e-20 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 89 / 1e-19 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028457 [exp] 87 / 1e-19 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10038480 [exp] 84 / 1e-19 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10041909 [exp] 87 / 2e-19 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237900 [exp] 104 / 1e-26 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.009G029200 [exp] 103 / 3e-26 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.014G025300 [exp] 92 / 3e-22 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.002G124100 [exp] 92 / 3e-22 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.010G192100 [exp] 90 / 8e-22 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 90 / 2e-20 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 89 / 4e-20 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.008G065400 [exp] 85 / 5e-20 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G111400 [exp] 87 / 8e-20 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.005G114700 [exp] 86 / 2e-19 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10040840 pacid=23157694 polypeptide=Lus10040840 locus=Lus10040840.g ID=Lus10040840.BGIv1.0 annot-version=v1.0 ATGGACACTAATAACCCAGCAGCCGCCAACAAGAAGAATGCTACCTCTTCAAGAATTCCGGCCAACTTCAGGTGGACCCCGACTTCGCCGCAGATAAACT TGCTGGAAGGGCTGTACAACCAAGGCCTGAGGACTCCTACACCTGATCAGATCCAGCAGATCGCCGCCATGCTCAGCACCCACGGCCACATCGAAGGCAA AAACGTCTTCTACTGGTTCCAGAACCATAAAGCCCGACAGCGCCAAAAGCTAAAACAGGATGTTATTATCAATAATAATATTAATCATAATAATAATCTC CCGTTCGTTAATCACCATCCTCATCATCACTTCCTTCGCAAGCCTCCTCTTCCGCCGCCTTCTCCTCACGGCGTTGTTCGCCACGTCCCATCTCCTTCCC CAGGTCATTGTGGGACGTCGTCGTACAATACGTCATCACAAGCAGATCTAGGGATGCCACGTCGACCCCAAGAATTTCGAGTGGTCCCGGCCGGTGGATT AACCCAGATTAGATCGGCGGAAAAGATCTCGTGGAGGACAGCGACAGCAGCCGCCCACAGGATCGTCCCCGACACTCTAAATAATAATGACGGCGGAACT TATAACTATGATTGTGATACCGACCAAGAAACGCTGCCGCTGTTCCCGCTGCACCCCACCGGAGGTTTGCTGGCGAGGTCGTCTACTTCGTCGTCGTCCG ATAATAATCTTTGTTCTAGCCCTAGCTATAGCTCGTGCGATACTGGTGTCGATGTTGAAGATGGCGATAGTGGTCGCCGTTGCTTCGACTTCTTCTCGCT TGGGCAAGGTCATTTATGTCCCAGTCAAAGATATTGA
AA sequence Show only first row Show all	>Lus10040840 pacid=23157694 polypeptide=Lus10040840 locus=Lus10040840.g ID=Lus10040840.BGIv1.0 annot-version=v1.0 MDTNNPAAANKKNATSSRIPANFRWTPTSPQINLLEGLYNQGLRTPTPDQIQQIAAMLSTHGHIEGKNVFYWFQNHKARQRQKLKQDVIINNNINHNNNL PFVNHHPHHHFLRKPPLPPPSPHGVVRHVPSPSPGHCGTSSYNTSSQADLGMPRRPQEFRVVPAGGLTQIRSAEKISWRTATAAAHRIVPDTLNNNDGGT YNYDCDTDQETLPLFPLHPTGGLLARSSTSSSSDNNLCSSPSYSSCDTGVDVEDGDSGRRCFDFFSLGQGHLCPSQRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	2.6	0.9353
AT1G77100			Peroxidase superfamily protein...		Lus10018929 [exp]	3.6	0.8771
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	5.2	0.9107
					Lus10034979 [exp]	5.7	0.9119
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	7.1	0.8929
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	8.1	0.8908
AT5G52450			MATE efflux family protein (.1...		Lus10017949 [exp]	8.9	0.8481
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	11.2	0.8690
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	12.6	0.8893
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	13.1	0.8876

Compare expression of checked genes

Lus10040840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.