Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28800 567 / 0 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) AT1G24490 384 / 2e-129 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016570 [exp] 743 / 0 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10006454 [exp] 381 / 1e-128 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10011398 [exp] 240 / 8e-74 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237800 [exp] 642 / 0 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.009G029100 [exp] 627 / 0 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.010G051900 [exp] 422 / 5e-144 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.008G182000 [exp] 405 / 1e-137 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.001G091800 [exp] 46 / 4e-05 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10040841 pacid=23157800 polypeptide=Lus10040841 locus=Lus10040841.g ID=Lus10040841.BGIv1.0 annot-version=v1.0 ATGGCGAAAACCCTAATTTCATACCCGACCTTCCTCGGGATGCCGCTTCCCGCCCGCTCTCGCCATGGACTCCTGCACACGCTCCCCAGCCGCCGGCTCA TCTCTACGACTTTGAAGATGAGCTTACATGATATTCCTCCGGTTCATCTCCCCTCGATTGACTTCGGTTCGATTTTTAGTAGAGCTGAGAGCGCTCTGTA CACGCTTGCCGATGCTGCGGTTGCAGTTGATTCCGCGTCTGGTGGTGCTGCTTCGAGCTCTGGTGACGGTGCCGTTCAGAAGAGCGGCGGTTGGTTCGGG TTTATCTCCGATGCTATGGAGTTCGTGCTCAAGATATTGGAGGACGGGCTTTCGGCTGTTCATATACCTTATGCATATGGATTCTCCATTATATTGTTGA CTGTTCTTGTTAAGTTGGCGACGTTGCCTTTGACGAAGCAACAGGCGAGTATATTTCCACCTTATATCGTTGTGGAGTCAACGTTAGCGATGCAAAACCT TCAACCAAAGATCAAAGCAATCCAGCAAAGATATGCCGGGAATCAGGAAAGAATACAACTCGAAACATCACGTCTGTATAGGCAAGCTGGGGTTAATCCA TTAGCAGGTTGTCTTCCTACTTTGGCCACAATCCCAGTGTGGATAGGCCTATATCAAGCTCTTTCCAATGTCGCAAACGAGGGATTGTTGACAGAAGGGT TCTTTTGGATTCCCTCTTTGGGTGGACCAACTTCAATCGCAGCTAGACAAAGTGGATCTGGAACTTCATGGCTTTTCCCATTTGTGGATGGCCATCCACC CTTGGGCTGGGGAGATACTGCCGCATACTTGGTGTTGCCGATATTGCTTATTGTTTCTCAGTATGTCTCTATGGAGATCATGAAGCCTCCCCAGACTGAT GATCCCACCCAAAAGAATACCCTTCTGATTTTCAAGTTTCTTCCTCTGATGATCGGCTATTTTTCGTTGTCTGTACCATCAGGCTTAACTATCTATTGGT TCACAAACAATGTTCTTAGCACAGCCCAACAGGTATGGTTGCGCCGATTGGGTGGTGCAAAACCAGTTGTCAATGAGGATGCAAGCGGAATCATCACAGC AGGACGTGCAAAACGATCATTTGCACAGCCAGGACAGCCTGGTGAAAGGGTAAAGCAGTTTAGGGATGAGGAGAAGAAGAAGAAGTTTAGCAAGGCCCTA TCAATAGATGATGCGCAAACTCTGGACTCTGAATCGGGTTCTCAGGAAGACTCAGATGATGAAACAAAGGACAAGGGCGAGGAGGTGCTAGAAGAAGCAT ATGCTTCTAGATTAGGTAAACAACTACCTGATGTTTCACAACCAAAGAGAAGCAAACGATCGAAGAGGAAGCGGACTGCATAA
AA sequence Show only first row Show all	>Lus10040841 pacid=23157800 polypeptide=Lus10040841 locus=Lus10040841.g ID=Lus10040841.BGIv1.0 annot-version=v1.0 MAKTLISYPTFLGMPLPARSRHGLLHTLPSRRLISTTLKMSLHDIPPVHLPSIDFGSIFSRAESALYTLADAAVAVDSASGGAASSSGDGAVQKSGGWFG FISDAMEFVLKILEDGLSAVHIPYAYGFSIILLTVLVKLATLPLTKQQASIFPPYIVVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNP LAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTSIAARQSGSGTSWLFPFVDGHPPLGWGDTAAYLVLPILLIVSQYVSMEIMKPPQTD DPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRRLGGAKPVVNEDASGIITAGRAKRSFAQPGQPGERVKQFRDEEKKKKFSKAL SIDDAQTLDSESGSQEDSDDETKDKGEEVLEEAYASRLGKQLPDVSQPKRSKRSKRKRTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	2.4	0.9458
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	3.5	0.9429
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	3.9	0.9402
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	4.7	0.9429
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	6.5	0.9373
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	7.2	0.9414
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	8.1	0.9060
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	9.4	0.9304
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	12.7	0.9318
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	14.3	0.9215

Compare expression of checked genes

Lus10040841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.