Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28790 310 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) AT5G40020 187 / 5e-59 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 169 / 1e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 168 / 1e-51 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 169 / 2e-51 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 167 / 4e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 171 / 8e-51 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 168 / 1e-50 Pathogenesis-related thaumatin superfamily protein (.1) AT1G77700 167 / 5e-50 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 164 / 7e-50 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016572 [exp] 453 / 1e-163 AT2G28790 328 / 3e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10005453 [exp] 340 / 5e-119 AT2G28790 333 / 1e-116 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004954 [exp] 336 / 3e-117 AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 182 / 1e-56 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 182 / 2e-56 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 175 / 3e-54 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10008304 [exp] 169 / 2e-51 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025055 [exp] 166 / 2e-50 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 167 / 5e-50 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028800 [exp] 345 / 3e-121 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G237600 [exp] 338 / 3e-118 AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.017G075500 [exp] 181 / 2e-56 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 180 / 6e-55 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G047800 [exp] 177 / 8e-55 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 177 / 5e-54 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G039200 [exp] 174 / 5e-54 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 170 / 1e-51 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 169 / 2e-51 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 169 / 4e-51 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10040843 pacid=23157943 polypeptide=Lus10040843 locus=Lus10040843.g ID=Lus10040843.BGIv1.0 annot-version=v1.0 ATGTCCTCTCACCGCCACCCATACGCCGCCGTTTCACTACTCGTCGTCCTCCTCCTCCTAATCTACCCCTCCACCTCCACCCCACCACCAGTAACCCTAA CCCTAGTCAACAACTGCCCATTCCCAGTCTACCCAGCCATCCAACCCTCCGCCGGCTTCCCCGTCCTCCAAAACGGCGGCTTCCCTCTCCAACCCTTAAC CCACCGTTCCTTCCCTGGCCCCACCTCCCTCTGGTCCGGCCGAATCTGGGCCCGAACCGGCTGCACCCAATCCGGTTCCACCTTCTGCTGCGCCACGGGG GACTGCTCCAACCGCCTCGAATGCAACGGCCTCGGTGGGGCCACGCCGGCCACCCTCGTCCAGCTCACCGTCCACCACGGCGACAACAACAATGACTTCT CCTCGTACGGTGTGTCCTTGGTAGACGGGTTCAACGTCCCGTTGACCGTGACCCCACACGAGGGTCAGGGGACCTGCCCTGTTGTGGGGTGCACGGCGAA TTTATTGGAGAGCTGCCCGGACCGGTTGAAGGTTTGGGCGGGTGGTTCGGTTGTGGGTTGTAAGAGTGGGTGCGAGGCGTTTGGGACGGACGAGCTTTGC TGTAGGAATGGGTTCAACAGTCCGGTGACGTGTAAAGGTTCGAGCTTTTCGGAGTTTTTTAAGCGCGCGTGTCCTGCAACGTTTACGTACGCGCATGACA CGCCGTCGCTCATGCATGACTGTTCTTCGCCACGTGAGCTTAAAATCATTTTCTGCCACTGA
AA sequence Show only first row Show all	>Lus10040843 pacid=23157943 polypeptide=Lus10040843 locus=Lus10040843.g ID=Lus10040843.BGIv1.0 annot-version=v1.0 MSSHRHPYAAVSLLVVLLLLIYPSTSTPPPVTLTLVNNCPFPVYPAIQPSAGFPVLQNGGFPLQPLTHRSFPGPTSLWSGRIWARTGCTQSGSTFCCATG DCSNRLECNGLGGATPATLVQLTVHHGDNNNDFSSYGVSLVDGFNVPLTVTPHEGQGTCPVVGCTANLLESCPDRLKVWAGGSVVGCKSGCEAFGTDELC CRNGFNSPVTCKGSSFSEFFKRACPATFTYAHDTPSLMHDCSSPRELKIIFCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	0	1
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	1.4	0.9726
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	2.0	0.9709
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	2.2	0.9590
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	4.0	0.9611
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	4.6	0.9618
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	4.6	0.9544
AT1G49000			unknown protein		Lus10032453 [exp]	5.1	0.9316
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	6.5	0.9574
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	7.9	0.9157
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	8.5	0.9032

Compare expression of checked genes

Lus10040843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.