Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46460 256 / 8e-89 UBC13 ubiquitin-conjugating enzyme 13 (.1) AT5G59300 258 / 9e-89 ATUBC7, UBC7 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) AT3G55380 246 / 1e-84 UBC14 ubiquitin-conjugating enzyme 14 (.1.2) AT1G14400 103 / 1e-28 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 103 / 1e-28 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G62540 102 / 2e-28 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G36340 78 / 9e-19 UBC31 ubiquitin-conjugating enzyme 31 (.1) AT3G08690 77 / 3e-18 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G50490 77 / 4e-18 UBC20 ubiquitin-conjugating enzyme 20 (.1) AT3G08700 76 / 4e-18 UBC12 ubiquitin-conjugating enzyme 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016573 [exp] 281 / 1e-98 AT5G59300 291 / 6e-102 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10036727 [exp] 103 / 1e-28 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 103 / 1e-28 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 103 / 3e-28 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 102 / 6e-28 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10039323 [exp] 79 / 5e-19 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 79 / 5e-19 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 79 / 6e-19 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 79 / 6e-19 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206832 [exp] 258 / 3e-89 AT3G46460 263 / 3e-91 ubiquitin-conjugating enzyme 13 (.1) Potri.010G206766 [exp] 256 / 1e-88 AT3G46460 261 / 2e-90 ubiquitin-conjugating enzyme 13 (.1) Potri.008G053800 [exp] 252 / 4e-87 AT5G59300 264 / 4e-91 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Potri.008G053900 [exp] 252 / 5e-87 AT3G55380 287 / 7e-101 ubiquitin-conjugating enzyme 14 (.1.2) Potri.019G039200 [exp] 104 / 4e-29 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 104 / 6e-29 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.013G064400 [exp] 103 / 1e-28 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.012G033000 [exp] 79 / 3e-19 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 79 / 3e-19 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 79 / 5e-19 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10040844 pacid=23157632 polypeptide=Lus10040844 locus=Lus10040844.g ID=Lus10040844.BGIv1.0 annot-version=v1.0 ATGTCGTCTCAGGGCAGCCTCCTCCTCCAAAAACAGCTTAAAGATCTTTGCAAGAACCCTGTAGATGGGTTCTCGGCGGGGCTTGTCGATGAGAACAACA TATTTGAATGGAGTGTTACTATTATTGGGCCGCCTGATACGCTTTACGAGGGGGGGTATTTCAATGCCATCATGAGCTTCCCTTCCAATTACCCAAACAG CCCTCCAACGGTTAAGTTTATTTCGGAGATGTGGCATCCTAATGTTTATCCAGATGGGCGTGTGTGCATATCAATTCTGCATCCACCTGGTGATGATCCA AATGGCTACGAACTTGCAAGCGAGCGTTGGATGCCTGTCCATACCGTTGAAAGTATTGTGTTGAGTGTCATATCAATGCTCTCGAGCCCTAATGACGAGT CTCCTGCCAATGTCGAAGCAGCGAAGGAATGGAGAGAGGTGAGGGACGAATTCAAGAAGAAAGTGAGCCGCTGCGTTAGAAGATCACAAGAAATGTCATG A
AA sequence Show only first row Show all	>Lus10040844 pacid=23157632 polypeptide=Lus10040844 locus=Lus10040844.g ID=Lus10040844.BGIv1.0 annot-version=v1.0 MSSQGSLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTLYEGGYFNAIMSFPSNYPNSPPTVKFISEMWHPNVYPDGRVCISILHPPGDDP NGYELASERWMPVHTVESIVLSVISMLSSPNDESPANVEAAKEWREVRDEFKKKVSRCVRRSQEMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10040844 [exp]	0	1
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10016573 [exp]	1.0	0.8890
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	11.0	0.7567
AT1G07940			GTP binding Elongation factor ...		Lus10023497 [exp]	11.2	0.7920
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	15.0	0.7753
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	16.3	0.7776
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10026615 [exp]	17.5	0.7504
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	18.5	0.7782
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	20.0	0.7792
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	21.8	0.7871
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	22.4	0.7586

Compare expression of checked genes

Lus10040844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.