Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) AT4G36490 69 / 4e-12 ATSFH12 SEC14-like 12 (.1) AT2G18180 67 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 65 / 7e-11 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 62 / 6e-10 ATSFH3 SEC14-like 3 (.1.2.3) AT1G19650 62 / 6e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 61 / 2e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 60 / 3e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 59 / 3e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 58 / 1e-08 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005452 [exp] 565 / 0 AT3G46450 417 / 2e-142 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10016575 [exp] 522 / 0 AT3G46450 242 / 1e-74 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004953 [exp] 467 / 1e-162 AT3G46450 358 / 4e-120 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10025988 [exp] 76 / 3e-14 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 74 / 1e-13 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 71 / 1e-12 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 71 / 1e-12 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 70 / 2e-12 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040432 [exp] 67 / 1e-11 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028700 [exp] 500 / 3e-175 AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.001G237400 [exp] 487 / 6e-170 AT3G46450 446 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.009G119400 [exp] 71 / 1e-12 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G020300 [exp] 70 / 2e-12 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.005G119700 [exp] 67 / 9e-12 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 65 / 5e-11 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157600 [exp] 64 / 1e-10 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157700 [exp] 64 / 2e-10 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 62 / 7e-10 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 54 / 1e-07 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10040845 pacid=23157707 polypeptide=Lus10040845 locus=Lus10040845.g ID=Lus10040845.BGIv1.0 annot-version=v1.0 ATGGGAGACCAGACGGAAAATTCTTGTTCAAGTGGGAACTCTCTGGTGGCTACTGCCAGTAATAGGAATGAAATTGGCAAGAGGAATCCAATAGCAGCAG TGCAGAATGCTGGTAAGCAGATTGCTTCTTTAAGTCTTGGAGGGAAAGGTGGTAGGGATGCAGTTTGTCATGTCGGCGTATTTTTGCTCAAAGTCGCGGC CTTGGAGACTGTACGAAGGGTGTCGAGGTCAAAGTGTCCTCTCGTATGGCGTAGTGTTCAGGCATTGCAATTTCTTTCCTACCCACCATTTAAGTGGATA CAGAGATGGGAACCAGTCAAAGGATTGGTTCATGGTGTGCAGATGATGTCCAGACCATTGCTAGTCCTTTCAATTGCAACAGTATTTTCTGATGAATCCA CTTACTGCAATGAACCTTTGGATAGTAACGATGGTTCTCATACAAATCCGGAAACATCAGCTGATTCACTATCTATCCATTCAGCCCTCGATCCAAGCAG TGATGTCAATCCTCCTAGTCTGGCACCTGAAAATTGGATGTTGGAACTCCACAAAGAGCTAGAAAATCAAGAGATTGCCTTACCAGAAAGGATCAACGAG GACGAGATAAGGAGATTTTACACTGCTGCAGATGGTGACTTCCAGAGCTTTTTGTCATCAATTAAGAACACAATCCGTTGGAGGGAAACTTATAGACTTC TTTCAGAACAGGAGCTCGTGACGTGGTCAAACGTATTGTTCTGGCATGGCTATGACATTGAAAACCAGCCCTGCCTTATCATACGTCTTGGACTAGCCTG CACAAACTTACAAGCTCAGGATAGACCTCGATTTGTTGAAGCAACTGGCGAACATGTTGATGCTTCAGTAACTCAGGTGGAGCACGGGATCCTTCATTTG CTCAAGAAAGATAGTCCTCAAATCATGGTGATTCTGGATTGTGGCGGCATAACTCCATTGCGAATTCCCATGCAGATGGTCAGATCTTGTTCTTCCCATC TGCAGCATAACTTCCCCAACCGTCTTGGACGCTTAGTCATTATAAGGCTCACTCCGGTCGCCCGTGTTATAGCCCAAACCTTCCTTCAGGTACTGAAACC GGTCACGAAAAAGAAGCTGAGAGTCGAAGGGAACAAGTACCATAAGGTTCTCGCCGAGTACCTCCAGACAGTCCCAGCTTATCTGGGCGGCACCTGTTCT TGCCAGAGATGCTTGGACACTGGAAACCACAATGTGCCGTGGCCGTCGAATGACGACACAAACAAGAGAGAGCTTGTTCGATGTCGTCCCATAGCATCAC TACCTCTGATCACTTCTCAGGCTAACGATGATTGTCAGCCGAACTTAGCTGAGTGGGACCGGCTACTGAAAACTGCCTTAATCGGCATCATCATGGCTTG TGTTTTTGTTGCTCTGGTTGCCGGACTGTATGAGTCTGAAAGTCGTCCCTTTTAG
AA sequence Show only first row Show all	>Lus10040845 pacid=23157707 polypeptide=Lus10040845 locus=Lus10040845.g ID=Lus10040845.BGIv1.0 annot-version=v1.0 MGDQTENSCSSGNSLVATASNRNEIGKRNPIAAVQNAGKQIASLSLGGKGGRDAVCHVGVFLLKVAALETVRRVSRSKCPLVWRSVQALQFLSYPPFKWI QRWEPVKGLVHGVQMMSRPLLVLSIATVFSDESTYCNEPLDSNDGSHTNPETSADSLSIHSALDPSSDVNPPSLAPENWMLELHKELENQEIALPERINE DEIRRFYTAADGDFQSFLSSIKNTIRWRETYRLLSEQELVTWSNVLFWHGYDIENQPCLIIRLGLACTNLQAQDRPRFVEATGEHVDASVTQVEHGILHL LKKDSPQIMVILDCGGITPLRIPMQMVRSCSSHLQHNFPNRLGRLVIIRLTPVARVIAQTFLQVLKPVTKKKLRVEGNKYHKVLAEYLQTVPAYLGGTCS CQRCLDTGNHNVPWPSNDDTNKRELVRCRPIASLPLITSQANDDCQPNLAEWDRLLKTALIGIIMACVFVALVAGLYESESRPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46450			SEC14 cytosolic factor family ...		Lus10040845 [exp]	0	1
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	4.5	0.8039
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	6.6	0.7699
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	8.8	0.7847
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	16.4	0.7828
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	19.0	0.7676
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	19.4	0.7244
AT1G75580			SAUR-like auxin-responsive pro...		Lus10024326 [exp]	26.5	0.7143
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	28.3	0.7474
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	28.8	0.7642
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	29.8	0.7393

Compare expression of checked genes

Lus10040845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.