Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28780 575 / 0 unknown protein AT3G09450 352 / 5e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005903 [exp] 1258 / 0 AT2G28780 720 / 0.0 unknown protein Lus10024409 [exp] 444 / 2e-142 AT2G28780 528 / 1e-176 unknown protein Lus10025334 [exp] 359 / 4e-111 AT3G09450 466 / 4e-154 unknown protein Lus10005902 [exp] 95 / 9e-23 ND / Lus10007010 [exp] 85 / 8e-19 AT2G28780 55 / 3e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237300 [exp] 730 / 0 AT2G28780 785 / 0.0 unknown protein Potri.009G028600 [exp] 721 / 0 AT2G28780 761 / 0.0 unknown protein Potri.006G082000 [exp] 445 / 6e-143 AT2G28780 555 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF04632 [flax] [poplar] FUSC Fusaric acid resistance protein family
Representative CDS sequence Show only first row Show all	>Lus10040846 pacid=23157795 polypeptide=Lus10040846 locus=Lus10040846.g ID=Lus10040846.BGIv1.0 annot-version=v1.0 ATGCTGACATGCATACCTAACCACCAGACTCAGACTCCGAACCGAGCCAGAGCGGTATGGCAACGCTGCCTGGCCTCGGCCTTCCGGACTGCGCTGGCAT GCACGATAGTGGGCTGCACCACCCTCTACGGCCCGCAGGCTATCCAACGCCACGTGGCATTCCCAGCCTTCTCCTACGTCACGGTGATCCTCATTGTGAC AGATGCCACCCTGGGGGACGCCCTCAGGGCGTGCTGGCTGTCGCTTTACGCGACGGTCCAGACAGTATGTCCGGCCGTCGTGCTGTTCTGGATGGTCGGA CCGGGCCGGTTCAGCGCCGCCACGATCTCGCTGGCTGTGGCGGCGACCGCGTTTGCGGTGGCGCTCCCGGCTGGGACCCACATAGTGGCGAAGCGGATTG CGTTGGGGCAGATTGTGATCATCTACGTGGTGGGGTATATAAAGGGGGATAGCTTGAGGACGGAGTCGGTGATGCATCCGGTGCATGTGGCGACGAGTAC CGCCGTCGGTGGTGTTGCCTTTGTGAAGAAGAATTGCAAGTTTGCAGCTGAAAATGCGTCGGAAAGGCTGAAGCTGTACGTGAAAGCATTCTCCGCCAGC GATACTGCCTCAACATCCGCCTCCCTCACTCGCGCCAAAACATTGGCTTCCGCCGCCACAAAATTCCTCAACAAGATTAAACTTCACCAGGAAAGCACCA AATGGGAAACTTTTCCGCTGATCCTGCTGGGGAAAAATCGTCCAGTGAATCCAATACCCAAATTGCAGGAAATCGAGATGCTCTTAAGAGGAATGGAATT AGCTCTGTCGTCTTCTTCATCGTCATCAAGATTCAGTCATGAATCAGAATCTAAACAGAACTTGCAACAGTTACAAGAACACATCAGCCGATCGCTTAAA CAAATCATTAAATCAAACTCCTCCACCTCCGATTCATTTCCCACCGTCCCGGAATCTACCGCCGAAACCTTAACTGAATCCCTCCAGAAACTCATCCGAA CCTTCCCGACTAACCGCTCGGATTTGCCTCATTTCTTTTTCTGGCATTGTATTAAACACCTTCACTGCATCTCTTCACCAACTCCAAAACCACCGTCCAC CACCCCCTCCGGCCATAAAGTTGAAGGATCCAGCACTCAGACGAAGGATGATGATGGATTTGTACAGAGTGTTTGGTTGAGTATGTCCACTGGAATCGGG ACCAAAGACAGAGTATTACCGGCGTTCAAATGCTCTGTTTCGTTAGGCTTAGCCGTCATGTTCGGGCTAATGTACAGCAAGAAGAACGGATACTGGTCGG GCCTTCCGGTGGCGATCAGCCTCGCCGCCGCTTCCAGAGAGGCGACGTTCACCGTCGCGAACGTGAAAGCGCAAGGGACAGTGTTGGGAACCGTTTACGG CGTCCTTGGTTGCTTCGTCTTCGAAAGGTTTTTACCTGTCAGGTTCATGTCTCTGCTTCCGTGGTTCGTCGTCACAAGCTTCCTCCGCCGGAATCGGATG TACGGCCAGGCGGGAGGGATCTCCGCCGTGATCGGAGCTATACTGATCCTCGGCCGGAAGAACTTCGGCCAGCCGAGCGAATTCGCGATTGCGAGGATCA TCGAGACGTTCATCGGATTGTCCTGTTCGATCTTCGTGGATCTACTGTTTCAGCCAACTCGAGCTTCTTCGTTAGCCAAAATCGAACTATCGGAATGTTT CGCAGCTTTAGGTTCTTGCGTAGATTGCTTGAGTCTGAAGGAAAACACAGCTACCGAATTGATCGATAACCACAAACAGCTGAAATCAAACGTTGAGGAG CTGAGGAAACTGATCGGAGAAGCTGAATTGGAACCGAATTTCTGGTTCTTGCCGTTTCCGAGCTCCTGCTATGGAAAGCTGTTAATTTCATTGTCAAACA TGGCGGATTTATTGCTCTTCAGTGCCCAATTAAGGTTAGGGTTGGCCGGAGATCAAATTAGTGATTTCGGCAAGGTAGATAGCGAAATCAAAATTTTCAA AGACACAATTGGTCCGTTGGTAAAATGCTTCGAGGACGTGAGCAAGTGGAAACATTCTTTAAAAACGCTCGATGAAGAGTTGGAGAAGGAGAAAAAGAGT ATAGAGTACGATTTGGAATCGGGGAAGTTTCCAAATCGGAAGGCATTCGAGGTGTTGAATTCGAGTCAGAGCGATGATCAGGAGAAGAAGGATATCGTGG GGAGTTATTTGGAGCGAGTCAAGGAAGTTGCGGAGGGAGGGAATAATGGGGAGGAGATGGTGATGTTGGGATTGGGAGGGGTTGGATTTTGTGTTAATGG GTTGATAAAGGAAGTGAAAGAGGTTGGGAAGTGCATCAATGAACTTGTGCAATTGGAGAACCCTACTTGTGATAATGTGAACTTGCTTGAAGTTGCTTGT AAGATTGATGCTTTGGTCATCACTCAAACAAGAACTCCAATTACTGCAATGATGAGAAACAGAGTCGACTCTGCTTTCTCCTACGGCTTACTGCTGCTCT TCATCGTCGTCATAGCAGCCGCCGCCAGTACTATAGCTCTCTCATCACCTTCTCCTCCGGTGAGGAGCCGCCAACTGGCCGCTGGCAGAGTGTTGTTGCC AGAAACTGATCAGCAAGAGATAGGGACCGACGACGTCGTATACAAAAGGATTGGATGGAAGAGACGAAGTAGATCCCCGGGATGGGGATCTGCTGCGATG GCGTCCGACAAGGATGCAGACGCGGACTCTTCTCTGGTCTCTGCGACTGCAATAACATCTCCTCCTCCTGGGTCGTTCGTTTAA
AA sequence Show only first row Show all	>Lus10040846 pacid=23157795 polypeptide=Lus10040846 locus=Lus10040846.g ID=Lus10040846.BGIv1.0 annot-version=v1.0 MLTCIPNHQTQTPNRARAVWQRCLASAFRTALACTIVGCTTLYGPQAIQRHVAFPAFSYVTVILIVTDATLGDALRACWLSLYATVQTVCPAVVLFWMVG PGRFSAATISLAVAATAFAVALPAGTHIVAKRIALGQIVIIYVVGYIKGDSLRTESVMHPVHVATSTAVGGVAFVKKNCKFAAENASERLKLYVKAFSAS DTASTSASLTRAKTLASAATKFLNKIKLHQESTKWETFPLILLGKNRPVNPIPKLQEIEMLLRGMELALSSSSSSSRFSHESESKQNLQQLQEHISRSLK QIIKSNSSTSDSFPTVPESTAETLTESLQKLIRTFPTNRSDLPHFFFWHCIKHLHCISSPTPKPPSTTPSGHKVEGSSTQTKDDDGFVQSVWLSMSTGIG TKDRVLPAFKCSVSLGLAVMFGLMYSKKNGYWSGLPVAISLAAASREATFTVANVKAQGTVLGTVYGVLGCFVFERFLPVRFMSLLPWFVVTSFLRRNRM YGQAGGISAVIGAILILGRKNFGQPSEFAIARIIETFIGLSCSIFVDLLFQPTRASSLAKIELSECFAALGSCVDCLSLKENTATELIDNHKQLKSNVEE LRKLIGEAELEPNFWFLPFPSSCYGKLLISLSNMADLLLFSAQLRLGLAGDQISDFGKVDSEIKIFKDTIGPLVKCFEDVSKWKHSLKTLDEELEKEKKS IEYDLESGKFPNRKAFEVLNSSQSDDQEKKDIVGSYLERVKEVAEGGNNGEEMVMLGLGGVGFCVNGLIKEVKEVGKCINELVQLENPTCDNVNLLEVAC KIDALVITQTRTPITAMMRNRVDSAFSYGLLLLFIVVIAAAASTIALSSPSPPVRSRQLAAGRVLLPETDQQEIGTDDVVYKRIGWKRRSRSPGWGSAAM ASDKDADADSSLVSATAITSPPPGSFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28780			unknown protein		Lus10040846 [exp]	0	1
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	6.6	0.8170
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	6.8	0.8231
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	10.8	0.8214
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	14.1	0.7893
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	15.6	0.7416
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	17.0	0.7872
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	18.1	0.8182
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	20.9	0.8158
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	22.8	0.7686
AT5G65030			unknown protein		Lus10041692 [exp]	41.8	0.7899

Compare expression of checked genes

Lus10040846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.