Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46440 635 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 629 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G28760 627 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT2G47650 479 / 2e-169 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 477 / 9e-169 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 469 / 1e-165 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G08200 127 / 2e-33 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 124 / 3e-32 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G53500 114 / 1e-27 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 113 / 2e-27 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005450 [exp] 649 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 626 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 626 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005900 [exp] 563 / 0 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 496 / 8e-179 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 488 / 6e-173 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 484 / 2e-171 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 464 / 4e-164 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 464 / 1e-163 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237200 [exp] 640 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 640 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 638 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.002G204400 [exp] 478 / 4e-169 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 478 / 5e-169 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 474 / 1e-167 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 471 / 2e-166 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.009G150600 [exp] 120 / 1e-30 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.004G189900 [exp] 119 / 2e-30 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 117 / 1e-29 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10040847 pacid=23157876 polypeptide=Lus10040847 locus=Lus10040847.g ID=Lus10040847.BGIv1.0 annot-version=v1.0 ATGGCGACCGATTCCGCTAACGGGCAGCACCAATCAACCACCAAGCCGCCACCACAGCCTTCCCCATTGCGTTCTTCCAAGTTTTGCCAGTCGAATATGA GGATTTTGGTCACTGGAGGAGCTGGATTCATTGGTTCCCACTTGGTGGATCGGCTGATGGAAAATGAGAAGAATGAGGTAATTGTTGCTGATAACTATTT CACCGGATCGAAAGAGAACCTCAGGAAGTGGATTGGCCACCCGAGATTTGAGCTCATCCGTCATGATGTGACAGAGCCATTGCTGGTTGAGGTGGACCAG ATTTACCATCTTGCATGTCCTGCTTCTCCCATTTTCTACAAGTACAATCCTGTAAAGACAATAAAAACAAATGTAATCGGTACCCTCAACATGCTGGGAC TCGCCAAGCGAGTTGGAGCTAGAATTCTGCTGACATCAACTTCGGAGGTGTATGGTGATCCTCTTATCCACCCTCAACCCGAGACCTACTGGGGCAACGT AAACCCAATCGGGGTTCGAAGCTGCTACGATGAGGGGAAACGTGTGGCTGAGACATTGATGTTTGATTATCACAGGCAGCATGGCATTGAAATCCGAATC GCGAGGATCTTCAACACATATGGACCGCGCATGAACATTGACGATGGGCGTGTTGTCAGCAACTTCATAGCTCAAGCACTTCGCGGTGAGCCATTGACTG TACAGAAGCCAGGAACTCAAACCCGTAGCTTCTGCTATGTATCTGACATGGTTGATGGCCTCATCAGGCTGATGGGGGGAGAGAACACTGGACCGATCAA CATCGGGAACCCAGGGGAGTTCACCATGACTGAACTTGCCGAGACAGTGAAGGAGCTGATAAACCCAGAGGTGGAGATAAAGAGCGTGGAGAACACACCG GATGATCCAAGGCAGAGGAAGCCGGACATCACAAAGGCAAAGGAACTGCTGGGTTGGGAGCCTAAGGTTAAGTTGAAGGACGGACTTCCCCTCATGGAAG AAGATTTCCGTAGGAGGCTTGGTGTGTCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10040847 pacid=23157876 polypeptide=Lus10040847 locus=Lus10040847.g ID=Lus10040847.BGIv1.0 annot-version=v1.0 MATDSANGQHQSTTKPPPQPSPLRSSKFCQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKENLRKWIGHPRFELIRHDVTEPLLVEVDQ IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMGGENTGPINIGNPGEFTMTELAETVKELINPEVEIKSVENTP DDPRQRKPDITKAKELLGWEPKVKLKDGLPLMEEDFRRRLGVSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	2.2	0.9701
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	2.4	0.9640
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	2.6	0.9502
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	3.5	0.9663
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	4.5	0.9596
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	6.3	0.9481
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	6.3	0.9492
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	7.4	0.9456
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	8.4	0.9237
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	8.5	0.9445

Compare expression of checked genes

Lus10040847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.