Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59970 112 / 2e-30 Histone superfamily protein (.1) AT5G02530 111 / 4e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G59950 105 / 3e-26 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G59690 99 / 1e-25 Histone superfamily protein (.1) AT1G07820 98 / 3e-25 Histone superfamily protein (.1.2) AT1G07660 98 / 4e-25 Histone superfamily protein (.1.2) AT2G28740 94 / 2e-23 HIS4 histone H4 (.1) AT3G45930 93 / 2e-23 Histone superfamily protein (.1) AT3G53730 92 / 7e-23 Histone superfamily protein (.1) AT3G46320 91 / 1e-22 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040849 [exp] 175 / 9e-55 AT3G53730 199 / 2e-68 Histone superfamily protein (.1) Lus10005896 [exp] 169 / 2e-52 AT3G53730 199 / 2e-68 Histone superfamily protein (.1) Lus10005898 [exp] 168 / 3e-52 AT3G53730 199 / 2e-68 Histone superfamily protein (.1) Lus10005895 [exp] 169 / 2e-50 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038481 [exp] 117 / 3e-32 AT3G53730 199 / 2e-68 Histone superfamily protein (.1) Lus10004946 [exp] 117 / 1e-30 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 117 / 1e-30 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10019956 [exp] 112 / 1e-30 AT3G46320 199 / 2e-68 Histone superfamily protein (.1) Lus10005448 [exp] 110 / 1e-29 AT2G28740 199 / 2e-68 histone H4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 125 / 4e-34 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 112 / 7e-29 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.010G214000 [exp] 105 / 4e-28 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.010G213900 [exp] 104 / 1e-27 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.007G013500 [exp] 100 / 4e-26 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.018G092666 [exp] 100 / 7e-26 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.007G012500 [exp] 98 / 3e-25 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.018G093000 [exp] 92 / 4e-23 AT5G59970 162 / 1e-53 Histone superfamily protein (.1) Potri.017G129900 [exp] 93 / 2e-21 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 92 / 2e-21 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040851 pacid=23157762 polypeptide=Lus10040851 locus=Lus10040851.g ID=Lus10040851.BGIv1.0 annot-version=v1.0 ATGTCCCTCGATGATAGCCATAAGAACCCCGCCGCTGGCAACTTCCGTGGTCGCGCTCGAGGTCGAGGCCTTTTCCGCGGCCGGACTTCATTACCTGGCC CAGCTCGCCGTATCCCTAACCGGGGAGCTCCCGAAATGGCGTGGCAGCACGACATGTTCGCGCCCGAGCCTCCCGCTATTGAAACGGGGACTAAGCTCTA CGTCTCCAATCTTGATTACGGCGTGTCAAACGAAGACGTAAAGGAACTGTTCTCTGAAGTTGGTGATGTGAAGCGGTATGGAATTCATTACGACAGTAGC GGTAGATCCAAGGTACCTGACGGAAAGAGGATGAAGATCGAGCTTGTGGGAACGAATATTATCACCACTCCCGCTATGCCCGCAGAGGGTATGTTTCCCT TCTTCGATGTTTCGGTTTCACTTGTTTATTGTTTTCAGGCTGAATCTCAATCATCCGCCGAAACCGTAGAGAGTCCTTCCTTGCCTCTTCAAAGCATAGA CGACATCCATAGCAGTCACCGTCTTCCTCCTGGCGTGCTCAGTGTAGGTAACGGCATCCCTGATGACATTCTCCAAGAAGATCTTGAGCACTCCGCGGGT CTCCTCGTAGATCAGACCACTGATACGCTTCACGCCTCCTCTGCGAGCCAAACGACGAATAGCTGGCTTTGTAATTCCCTGGATGTTATCCCTGAGGACC TTCCTGTGCCGCTTGGCTCCTCCCTTTCCAAGACCTTTGCCTCCCTTGCCGCGACCGGACATTTTCTCAGAGAGGGATTGTCAAAGCTGGAGAATTTGTT TATGGAGGATGAGAATTTGGAATGGTTGACTCGGTTCGTGTTGGGGGGAGTTTATATAAGTGCGGGATGTAGTTTGAGTTATGAGCTGATAGCCACTGGA TTGAGGTTTCGATGGACGGCGGGGATTGAGTTTGAAATTCGCGACACGGATTTGTGTTTTTCGCGGTGGGTTTTGGCGCTGAAGAGGGTGTTTGGAGCGG TCGATCCGCGTGAAATGGTATCAGGAGATATCAGCCGAAGATTAGGATGA
AA sequence Show only first row Show all	>Lus10040851 pacid=23157762 polypeptide=Lus10040851 locus=Lus10040851.g ID=Lus10040851.BGIv1.0 annot-version=v1.0 MSLDDSHKNPAAGNFRGRARGRGLFRGRTSLPGPARRIPNRGAPEMAWQHDMFAPEPPAIETGTKLYVSNLDYGVSNEDVKELFSEVGDVKRYGIHYDSS GRSKVPDGKRMKIELVGTNIITTPAMPAEGMFPFFDVSVSLVYCFQAESQSSAETVESPSLPLQSIDDIHSSHRLPPGVLSVGNGIPDDILQEDLEHSAG LLVDQTTDTLHASSASQTTNSWLCNSLDVIPEDLPVPLGSSLSKTFASLAATGHFLREGLSKLENLFMEDENLEWLTRFVLGGVYISAGCSLSYELIATG LRFRWTAGIEFEIRDTDLCFSRWVLALKRVFGAVDPREMVSGDISRRLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	0	1
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	1.4	0.9002
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	1.4	0.8966
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	3.9	0.8641
AT1G11240			unknown protein		Lus10018438 [exp]	4.5	0.8778
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	5.2	0.8817
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	6.0	0.8221
AT1G73450			Protein kinase superfamily pro...		Lus10031328 [exp]	6.5	0.8162
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	7.7	0.8050
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	7.7	0.8548
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10041501 [exp]	8.0	0.8014

Compare expression of checked genes

Lus10040851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.