Plant FIBer expression Database

Lus10040852 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07795 89 / 1e-23 unknown protein
AT2G37530 76 / 2e-18 unknown protein
AT2G28725 73 / 1e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005894
[exp]
216 / 1e-73 AT1G07795 97 / 5e-27 unknown protein
Lus10023761
[exp]
69 / 6e-16 AT1G07795 89 / 5e-24 unknown protein
Lus10024416
[exp]
54 / 3e-10 AT2G37530 105 / 2e-30 unknown protein
Lus10025320
[exp]
51 / 5e-09 AT2G37530 99 / 5e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G083800
[exp]
82 / 3e-21 AT2G37530 93 / 1e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10040852 pacid=23157650 polypeptide=Lus10040852 locus=Lus10040852.g ID=Lus10040852.BGIv1.0 annot-version=v1.0
ATGCCATCCTTCCAAGCTCTGATCCGCCGTCTCTCATCTCTAAACTGGCGAGTCTTCTTACAAGCGGCGGCCTGGACGACTCTCCTCAGCCTGACAGTCG
CCGTCGCATCGTTCGCGCCGGAGCTAGCATTCGTCTCCGCCGTGTCGTCCTCTTCGTCGTCGAAATCGGCGTCTTCTCTACCGTGGCTGTTCTCGAGGAC
AGCGCCGGCATGTGCAGGCGAAGGCATGGTGGGGCTGCCGATGATGGAATCGCCTAGGGACGTAATCTGCTTGCCTGGTCACATGGTGAAGAGGTCTAAT
TGGGATTTCTTCGTTCCGACGGTTTTCGCGGCGTTGGTTGTTAGTGGGTCGGCTTGCCTTGTTCGGTCTCTGGGCTTGTGGAGCGACGCTCGTCAGAGCT
AA
AA sequence
>Lus10040852 pacid=23157650 polypeptide=Lus10040852 locus=Lus10040852.g ID=Lus10040852.BGIv1.0 annot-version=v1.0
MPSFQALIRRLSSLNWRVFLQAAAWTTLLSLTVAVASFAPELAFVSAVSSSSSSKSASSLPWLFSRTAPACAGEGMVGLPMMESPRDVICLPGHMVKRSN
WDFFVPTVFAALVVSGSACLVRSLGLWSDARQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07795 unknown protein Lus10040852
[exp]
0 1
AT5G17820 Peroxidase superfamily protein... Lus10013631
[exp]
2.0 0.9568
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Lus10020549
[exp]
8.8 0.9519
AT3G52790 peptidoglycan-binding LysM dom... Lus10027407
[exp]
8.8 0.9455
AT3G54450 Major facilitator superfamily ... Lus10039521
[exp]
11.5 0.9468
AT2G30490 REF3, CYP73A5, ... REDUCED EPRDERMAL FLUORESCENCE... Lus10019110
[exp]
12.0 0.9504
AT2G03550 alpha/beta-Hydrolases superfam... Lus10019885
[exp]
14.7 0.9503
AT3G18280 Bifunctional inhibitor/lipid-t... Lus10013030
[exp]
19.6 0.9217
AT3G25590 unknown protein Lus10034409
[exp]
20.0 0.9274
Lus10004651
[exp]
20.0 0.9419
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Lus10006258
[exp]
20.4 0.9484

Lus10040852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.