Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59830 248 / 5e-78 unknown protein AT5G13660 186 / 4e-53 unknown protein AT3G53680 131 / 7e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 131 / 8e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 76 / 2e-14 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 66 / 4e-11 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005889 [exp] 797 / 0 AT5G59830 278 / 2e-89 unknown protein Lus10025307 [exp] 198 / 1e-57 AT5G59830 238 / 6e-73 unknown protein Lus10024426 [exp] 183 / 2e-52 AT5G59830 231 / 1e-70 unknown protein Lus10024427 [exp] 173 / 1e-46 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10005963 [exp] 170 / 7e-46 AT5G13660 216 / 4e-60 unknown protein Lus10025315 [exp] 136 / 3e-34 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 135 / 6e-34 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 80 / 1e-15 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 78 / 6e-15 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027800 [exp] 358 / 2e-120 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 354 / 4e-119 AT5G59830 375 / 2e-127 unknown protein Potri.006G082800 [exp] 233 / 8e-71 AT5G13660 261 / 2e-80 unknown protein Potri.008G051300 [exp] 206 / 4e-60 AT5G13660 317 / 1e-100 unknown protein Potri.010G209300 [exp] 194 / 1e-55 AT5G13660 308 / 2e-97 unknown protein Potri.006G083600 [exp] 140 / 5e-36 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 74 / 8e-14 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 74 / 9e-14 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 69 / 2e-12 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 63 / 3e-10 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040857 pacid=23157840 polypeptide=Lus10040857 locus=Lus10040857.g ID=Lus10040857.BGIv1.0 annot-version=v1.0 ATGGAGCCTAAGAGAACTACTCATCAGTGGTTTGCTGATGGTGCTGAACTAGACCTGTACCCTTACAAGAAGCAAGCTGTGGGACCTTCGAATCCGATGC CAGGCTCAGGAGTCCCTACTGCATGTCCATGGGATCCTAATGCCAAAGGCTCTAGAGTCTCTACTGCATCTCCATGGGATCATCCTAACACCAGTTTTCA GAACACCAATTTCCAGAGAGAAAATGACCAATTCGTTCACCAGTTATTTGGATCCGACGCACCATTATCTGACAACTTGTCTTATAGGAATATATCTCAT GGTGGAGCAGGGACAATAGATGCATCTGCTGGTCTGTCTAGTTCTCACGGTATGGGACATGTTGATTTGAGTATTAGCTATGGTGGTGCGAGAAAAGTCA AAGTGGATCAAGTCAAGGGCGGAAATGAGATGAGCCTTTATTCGAGGGGACATAATAATTCTCTTGCCGGAACCGATTTCAGCATATCTCAGAATCAGGA GGTTAATACGGGCGGTGGAGTTGGTTTAATATTGACAGGACATGCTACCAACAAGGAACAAGAAAATGTACTTTACATGAACCAGATCTACAATGGAGGG GGAGTCCATACTGGTTCTGTAAACACCTCTAGCTATGTTCAAGGAGGTATAAGTGCTGCTCCGATCAGTACCTGCGGTAAGGAGGCTGAGAATGCATTGT TCTTTGACGGATTTGACCAACCCTATGATGTTTCGTTAGTTCGCCCTCCAGAAGCAGCAGCTCAAAAACCGGAGCCGGATGCCTCAAATTCAAGTTCAGC CATACCAGCAGCACCGAAACCGAAACAGCAGTCTTCAAAGGCAAAACCGGACAGCAAGCCGTCCCGAAAAGAAGCTCCAAACAGTTTCCCTGCAAATGTC AAGAGTTTGCTACAAACCGGCATGCTCGATGGGATTCCGGTGAAGTACGTTTCAGTATCTCGGGAGGCTTTTCAGGCTGTGATAAAGGATTCTGGCTTTC TTTGTGGCTGTCAGTCGTGTAACTACGCCAAGGCGGTGAATGCGTATGAGTTGGAACGTCACGCTGGCTTTAAATCAAAGCACCCAAATAGCCACATCTA CTTCGACAATGGGAAGACTATCTATCAGGTAGTGCAGGAATTGAAGAGCACACCGCAAAGCAAGTTGTTTGATGTCATTCAAACGGCGTTTGGTGCGCCG CTCAATCAGAAGTCCTTCAAGATCTGGAAAGAATCGTACGAAGCTGCAATGCGGGAGCTGCAGCGTATATATGGCAAGGACGAATTGAATTTGTGA
AA sequence Show only first row Show all	>Lus10040857 pacid=23157840 polypeptide=Lus10040857 locus=Lus10040857.g ID=Lus10040857.BGIv1.0 annot-version=v1.0 MEPKRTTHQWFADGAELDLYPYKKQAVGPSNPMPGSGVPTACPWDPNAKGSRVSTASPWDHPNTSFQNTNFQRENDQFVHQLFGSDAPLSDNLSYRNISH GGAGTIDASAGLSSSHGMGHVDLSISYGGARKVKVDQVKGGNEMSLYSRGHNNSLAGTDFSISQNQEVNTGGGVGLILTGHATNKEQENVLYMNQIYNGG GVHTGSVNTSSYVQGGISAAPISTCGKEAENALFFDGFDQPYDVSLVRPPEAAAQKPEPDASNSSSAIPAAPKPKQQSSKAKPDSKPSRKEAPNSFPANV KSLLQTGMLDGIPVKYVSVSREAFQAVIKDSGFLCGCQSCNYAKAVNAYELERHAGFKSKHPNSHIYFDNGKTIYQVVQELKSTPQSKLFDVIQTAFGAP LNQKSFKIWKESYEAAMRELQRIYGKDELNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59830			unknown protein		Lus10040857 [exp]	0	1
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10008872 [exp]	2.0	0.7300
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	7.7	0.7548
AT3G60850			unknown protein		Lus10004021 [exp]	8.4	0.7246
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	9.9	0.7575
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	12.4	0.7069
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	13.0	0.6795
					Lus10013070 [exp]	13.5	0.7041
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	16.0	0.7193
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	16.2	0.7061
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	17.7	0.7324

Compare expression of checked genes

Lus10040857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.