Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59800 66 / 3e-13 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) AT5G59380 54 / 3e-09 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 44 / 6e-06 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005888 [exp] 283 / 3e-96 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10004963 [exp] 42 / 0.0001 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005460 [exp] 40 / 0.0002 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027600 [exp] 92 / 3e-23 AT5G59800 96 / 3e-23 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Potri.009G031100 [exp] 54 / 3e-09 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.001G240100 [exp] 47 / 1e-06 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10040859 pacid=23157644 polypeptide=Lus10040859 locus=Lus10040859.g ID=Lus10040859.BGIv1.0 annot-version=v1.0 ATGCAAAGTGTTCCCAGTGTCTTCAAGAGCAGCTCACAATTCGACTTACCTTGTGATTGGCTTGTTGAGTTAAGACCAAGGAGTGATGGTACTAGATCTG ACAAGTATTACATTGAACCAGGGACTGGACGGAAGTTTCGATCAGTGGTAGCTGCTCAGAAACACATCAAAGAAGCTGAAATTGTTACAGCCAGTATCAA ATCATTGATGCCAATGGTTTATACTACCAAAGATAATGTCACTGGGAAGGTCAAAAAGTTCAAACGTTTAGCAAATGTAGGAAAGACGAGTGAACTCACC ATGAAGCTTCACACAAGCAAGGAGACCAGAGCCGTAACACCCAGCCGACCGGTAACTCAAATAAAATGGGTTTTCAGAGGTCAAGGCAAAAATATATGGA GTCCTTCCATTGACGATTCCCCTGTGCCTAATTCCGAAGTTCGGCAATGGTCCAAGGCATTCGTGTTGAGCATGGACTCTCAATAA
AA sequence Show only first row Show all	>Lus10040859 pacid=23157644 polypeptide=Lus10040859 locus=Lus10040859.g ID=Lus10040859.BGIv1.0 annot-version=v1.0 MQSVPSVFKSSSQFDLPCDWLVELRPRSDGTRSDKYYIEPGTGRKFRSVVAAQKHIKEAEIVTASIKSLMPMVYTTKDNVTGKVKKFKRLANVGKTSELT MKLHTSKETRAVTPSRPVTQIKWVFRGQGKNIWSPSIDDSPVPNSEVRQWSKAFVLSMDSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	0	1
					Lus10016109 [exp]	5.3	0.8943
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	7.9	0.9066
					Lus10026122 [exp]	9.2	0.8859
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	11.9	0.9014
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	12.2	0.8643
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	13.7	0.8999
AT5G20960		AT-AO1, AOalpha...	ARABIDOPSIS THALIANA ALDEHYDE ...		Lus10011279 [exp]	15.3	0.8872
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	15.9	0.8975
					Lus10008697 [exp]	18.7	0.8992
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	19.2	0.8555

Compare expression of checked genes

Lus10040859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.