Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46110 203 / 1e-61 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT5G59790 154 / 2e-42 Domain of unknown function (DUF966) (.1) AT2G28150 139 / 8e-36 Domain of unknown function (DUF966) (.1) AT5G10150 108 / 6e-26 Domain of unknown function (DUF966) (.1) AT1G05577 91 / 1e-19 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005887 [exp] 602 / 0 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 328 / 1e-108 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 312 / 4e-103 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 147 / 7e-39 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 146 / 9e-39 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 110 / 2e-27 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 110 / 7e-27 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 83 / 8e-17 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 76 / 6e-15 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235700 [exp] 314 / 2e-103 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 268 / 2e-85 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 144 / 7e-38 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 144 / 1e-37 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 135 / 3e-36 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 132 / 6e-36 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 121 / 4e-30 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 86 / 5e-18 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 84 / 2e-17 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10040860 pacid=23157733 polypeptide=Lus10040860 locus=Lus10040860.g ID=Lus10040860.BGIv1.0 annot-version=v1.0 ATGGCGGTCAGCAGTTCCAGAGGAAGAAACGCCGACCTTCTACGTCTCCCGAGGAAATGGAGTGATAGAGAACCCACTCCTGATAGACTCAGAGTCTGGG GTCACAACAACAGTACCAGTAATGCAATGACTAGCGATGAAATTGGCCATGAAAAGACAAAAATCACCTCGTCGGAAACCACCAGAGTCGCCGTCGTTTA CTACCTTTCTCGGAATGGCCAGCTCGAGCACCCGCATTTCATGGAAGTCCCTCTCTCTTCCCCCGACGGCCTCCACCTCCGAGATGTACTCAATCGACTG AACCTTCTCCGGGGAAAAGGCATGGCTAGTCTCTACTCTTGGTCTTCCAAACGGAGCTACAAGAGCGGATTTGTTTGGCATGATTTGGCGGAGGATGATT TCATCTACCCTGCTCACGGCAATGAATACGTGCTCAAAGGGTCTGACCTTCCGGAACCTTCACCGCCGCTGCTCCAATCGGTTGAGGATTCCTTCAGATC TCTGAAGGTATCGGCGGCCGAGATTCACGGCCACAAGCCGTCGTCGTCGTCAGTCTCGAGCGACGAGCTGGTTGCTGCAGCTCGTCCGGCCATCGTGCGG CGGAGGAACCAGTCGTGGAGCTCAATCGATCTCAGCGAGTACAAGGTCTACAAGACGGAAAGAGATCAAAGTAGAGAGGAAATCGAGATCGGGATCGGGA TCTCGCCTCCGCCGTCGGATTCCAGCCCGGAGACGTTGGAGACGTTGATGAAAGCCGACAGACGGCTAATACTGAAGACCACATGCGTCGGCAAAGGAGC GGAGAATTCAAACCAGGCGGAAGTCAGCGGCGGCGGCGGGAAGATGAAGGCGTCGACGGTGCTGATGCAGCTGATCTCTTGTGGGTCCATCTCGTTCAGA GACTGTGGGGCCACCGCGGTGAAGGAGCAAGGGCTCTCTCTGATTGGCCAGTACAAAGGAAGACTGCCACGTGGCGTGGGGGACCACCTTGCTGCTGGCA CATCGAGCGAAATTCGTGCTTCTCCAGGGGTAATATTGGAAGATAAGGAGTATTTCAGCGGGAGCTTGATCGAGACCAAGAAGAAGCAAGATTTTCCCGG TTTGAAGCGGTCCAATTCATACAATGCAGACAGGGTTTCACAGTTGCAGTTGGGAGAAAAGGCTGAAGAAGTGGTCGTCGGAGGAAGGCGTAGTGCTGCT GCCGGCACGACTAGATGCATCCCGAGGAAGCAGGCCAAGGCGGCGAGTAGGAAAGATGAAGATCAGAGCAGCAGTACTGGGAGCAAGAGATTCGAGAATA TGGATGATTCGAAACTTTGA
AA sequence Show only first row Show all	>Lus10040860 pacid=23157733 polypeptide=Lus10040860 locus=Lus10040860.g ID=Lus10040860.BGIv1.0 annot-version=v1.0 MAVSSSRGRNADLLRLPRKWSDREPTPDRLRVWGHNNSTSNAMTSDEIGHEKTKITSSETTRVAVVYYLSRNGQLEHPHFMEVPLSSPDGLHLRDVLNRL NLLRGKGMASLYSWSSKRSYKSGFVWHDLAEDDFIYPAHGNEYVLKGSDLPEPSPPLLQSVEDSFRSLKVSAAEIHGHKPSSSSVSSDELVAAARPAIVR RRNQSWSSIDLSEYKVYKTERDQSREEIEIGIGISPPPSDSSPETLETLMKADRRLILKTTCVGKGAENSNQAEVSGGGGKMKASTVLMQLISCGSISFR DCGATAVKEQGLSLIGQYKGRLPRGVGDHLAAGTSSEIRASPGVILEDKEYFSGSLIETKKKQDFPGLKRSNSYNADRVSQLQLGEKAEEVVVGGRRSAA AGTTRCIPRKQAKAASRKDEDQSSSTGSKRFENMDDSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	0	1
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	3.9	0.8863
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	7.2	0.8061
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	11.0	0.8120
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	12.1	0.8664
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	16.7	0.8056
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10019828 [exp]	18.7	0.7917
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	20.3	0.7987
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	27.7	0.8459
AT5G52950			unknown protein		Lus10027565 [exp]	29.6	0.7979
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Lus10039140 [exp]	31.5	0.8050

Compare expression of checked genes

Lus10040860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.