Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59770 236 / 4e-78 Protein-tyrosine phosphatase-like, PTPLA (.1) AT5G10480 91 / 4e-22 PEP, PAS2 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024408 [exp] 72 / 2e-15 AT5G10480 281 / 2e-97 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3) Lus10025335 [exp] 73 / 7e-15 AT5G10480 267 / 2e-89 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235400 [exp] 343 / 3e-121 AT5G59770 241 / 3e-80 Protein-tyrosine phosphatase-like, PTPLA (.1) Potri.007G010900 [exp] 87 / 9e-21 AT5G10480 368 / 4e-131 PEPINO, PASTICCINO 2, Protein-tyrosine phosphatase-like, PTPLA (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04387 [flax] [poplar] PTPLA Protein tyrosine phosphatase-like protein, PTPLA
Representative CDS sequence Show only first row Show all	>Lus10040862 pacid=23157930 polypeptide=Lus10040862 locus=Lus10040862.g ID=Lus10040862.BGIv1.0 annot-version=v1.0 ATGGCTGGCTTCACCCCTCTCTATCTCCTAGCCTACAATTCGATTCAGGCCATTGGATGGGCAATTTCCCTCGGTAGAATCTCGAGCAGCTTATTCGCTA CTGGGTCAGTCGCCGGAGCTTATGCCTCCGCCGGAGACCTCATCTGTTTCTTGCAGAGCACTGCGTTTCTGGAAGTCATACACGGAGCATTAGGCATTGT TCCAAGTGGAGTTTTGTTGCCTTTTATGCAATGGGGAGGCAGATCCCACTGGGTATTGGCCATCGTCCGCAAAATCGTTGAGGTCCAGGAGTTTCCAGCA GTGTTCATAACCTTCACGGCTTGGAGCATAGCTGAGACTATTAGGTACTCACATTATGCTCTCAACTGCATAGGCAGTTGTCCCTCATGGGTTGTTTACC TCAGATACACTGCGTTCATCGTGCTGTATCCGATAGGACTTTTCCCCGGCGAAATCTGGCTTATGTACCAAGCGCTTCCATTTGTAAAGAAGAAGAACCT CTATGCAGACTTCTTTACTGCTTTCCCATTCAATTATTACAACTTTCTCTGGGCTGTAATCCTAAGCTACCCTTTCCTCTGGTTCAAACTCTACCTCCAT ATGCTCAAACAGCGCAGATCGAAGCTCGGCAAACCAACCCATAAGAAGAAGGAAAACTAG
AA sequence Show only first row Show all	>Lus10040862 pacid=23157930 polypeptide=Lus10040862 locus=Lus10040862.g ID=Lus10040862.BGIv1.0 annot-version=v1.0 MAGFTPLYLLAYNSIQAIGWAISLGRISSSLFATGSVAGAYASAGDLICFLQSTAFLEVIHGALGIVPSGVLLPFMQWGGRSHWVLAIVRKIVEVQEFPA VFITFTAWSIAETIRYSHYALNCIGSCPSWVVYLRYTAFIVLYPIGLFPGEIWLMYQALPFVKKKNLYADFFTAFPFNYYNFLWAVILSYPFLWFKLYLH MLKQRRSKLGKPTHKKKEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59770			Protein-tyrosine phosphatase-l...		Lus10040862 [exp]	0	1
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	3.7	0.8564
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	10.5	0.8416
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	15.0	0.8519
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	23.0	0.7956
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	27.5	0.8025
AT4G28740			unknown protein		Lus10011914 [exp]	28.2	0.8359
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	28.9	0.8327
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	32.5	0.8281
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	33.5	0.8412
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	36.1	0.8197

Compare expression of checked genes

Lus10040862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.