Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01470 336 / 1e-117 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 311 / 2e-107 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 288 / 1e-98 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT3G16240 236 / 4e-78 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT1G73190 234 / 2e-77 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 230 / 2e-75 BETA-TIP beta-tonoplast intrinsic protein (.1) AT5G47450 221 / 4e-72 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT4G17340 209 / 1e-67 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT2G25810 196 / 2e-62 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G47440 144 / 6e-42 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005885 [exp] 415 / 2e-148 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10022611 [exp] 340 / 5e-119 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10021510 [exp] 339 / 1e-118 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10023913 [exp] 324 / 7e-113 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 322 / 1e-111 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10003288 [exp] 303 / 1e-104 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10038293 [exp] 235 / 1e-77 AT3G16240 396 / 2e-141 delta tonoplast integral protein (.1) Lus10018256 [exp] 232 / 2e-76 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10025808 [exp] 231 / 4e-76 AT3G16240 389 / 2e-138 delta tonoplast integral protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235300 [exp] 347 / 5e-122 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.010G209900 [exp] 338 / 2e-118 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 337 / 5e-118 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.008G050700 [exp] 329 / 7e-115 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 321 / 1e-111 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 320 / 3e-111 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.009G005400 [exp] 288 / 1e-98 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.004G216500 [exp] 288 / 1e-98 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.001G186700 [exp] 241 / 3e-80 AT3G16240 372 / 8e-132 delta tonoplast integral protein (.1) Potri.018G152100 [exp] 239 / 3e-79 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10040863 pacid=23157934 polypeptide=Lus10040863 locus=Lus10040863.g ID=Lus10040863.BGIv1.0 annot-version=v1.0 ATGCCGATCTCTAGCATTGCTTTTGGGTCTCTTGCAGAAGCTGGCAAGCCCGATGCACTGAAAGCTGGTTTGGCCGAGTTCATCTCCATGCTCATCTTCG TCTTTGCCGGTGAAGGCTCCGGAATGGCTTACGGCAAACTCACCGGCGGCGGACCGGCGAGCCCGGCGGGACTAATATCGGCGGCCTTGGCTCATGCATT TGCCCTGTTTGTGGCGGTTTCTGTCGGTGCCAACATCTCCGGCGGCCACGTCCCCCCCGCCGTTACATTCGGCGCATTTGTCGGAGGACACATCACGTTT GTACGGAGTGTTGTGTATTGGATCGCTCAACTGCTCGGGTCCGTCGTCGCTTGCCTGCTTCTCAAGTTCTCTACCGGCGGTTTGGAAACGTCAGCGTTTG CGCTGTCAGCGGGGGTAGGGGAATGGAACGCGGTCGTTTTCGAGATCGTGATGACTTTTGGCCTGGTGTACACTGTCTACGCTACTGCCGTGGACCCCAA GAAAGGAGACCTGGGAACGATTGCGCCCATCGCCATTGGTTTCATTGTGGGGGCTAACATCTTGGCCGGAGGAGCCTTCGACGGTGCGTCGATGAACCCA GCAGTGTCGTTTGGACCTGCCGTCGTAAGCTGGAGTTGGAGCAGCCACTGGGTTTACTGGCTCGGACCATTCGTCGGCGCCGGCATTGCTGCCCTTGTCT ACGAGATCATCTTCATTGCCCCATCCACCCATGAGCCACTCCCCATTCAAGATTACTAA
AA sequence Show only first row Show all	>Lus10040863 pacid=23157934 polypeptide=Lus10040863 locus=Lus10040863.g ID=Lus10040863.BGIv1.0 annot-version=v1.0 MPISSIAFGSLAEAGKPDALKAGLAEFISMLIFVFAGEGSGMAYGKLTGGGPASPAGLISAALAHAFALFVAVSVGANISGGHVPPAVTFGAFVGGHITF VRSVVYWIAQLLGSVVACLLLKFSTGGLETSAFALSAGVGEWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGTIAPIAIGFIVGANILAGGAFDGASMNP AVSFGPAVVSWSWSSHWVYWLGPFVGAGIAALVYEIIFIAPSTHEPLPIQDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	0	1
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	1.0	0.9467
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	1.4	0.9372
AT5G42785			unknown protein		Lus10001961 [exp]	3.2	0.9010
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	4.2	0.9272
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	4.5	0.9255
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	6.0	0.8914
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	7.7	0.9116
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	8.0	0.8967
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	8.7	0.9190
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	9.9	0.9112

Compare expression of checked genes

Lus10040863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.