Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59750 712 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) AT5G64300 602 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 461 / 6e-157 riboflavin biosynthesis protein, putative (.1) AT3G55280 192 / 1e-57 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 182 / 6e-54 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035929 [exp] 593 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10012751 [exp] 587 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 587 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 571 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10006669 [exp] 403 / 5e-134 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 395 / 5e-129 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005883 [exp] 221 / 1e-68 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 216 / 2e-66 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 216 / 2e-66 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234900 [exp] 760 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Potri.007G097300 [exp] 598 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 592 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 543 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 531 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.009G027000 [exp] 207 / 2e-63 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 205 / 1e-62 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 205 / 2e-62 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 202 / 2e-61 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 200 / 9e-61 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10040865 pacid=23157667 polypeptide=Lus10040865 locus=Lus10040865.g ID=Lus10040865.BGIv1.0 annot-version=v1.0 ATGGATTCATCCGCCTTACTTCCCCGAGCTACCAACTTCCCCCGCCAAGTCTTCCCGCGCAACTCCCTCCATCCTCCTCCTTCCTATGGCGGAGGATCAG GAGCAACTCACTGCAAATGTAAAACAACCCAACCCAGAAACAGAGCCAGCAGCTGGACCGCCTCCGCCGCCGGTACTCAAAACGGCGCCGCATTCGACGA CACCAATCCAACTCCGTTTGGAACAGTCAACGCCGAAATCACAACCGACACAATCGATTTCTTCGTCAGCGACGCCGAAGGGGACCCGGATCGCCCCACA CCAGGATACTCCTCGATTGATCTGGCACTTAGCACCCTTCACCAAGGAAAGTTTGTGATTGTTGTGGACGATGAGGACGAGGCCGGAGTCGAAGGGAATT TAGTCATGGCGGCTTCGTTTACAACTGCGAAGAATGTAGCGTTCATGATGAAACATGGGTCGGGGATCGTCTCCGTGGGAATGAAAGAAGATGATCTCGT CAGGCTGAATCTTCCATTGATGTCCCCTGAAACTGAAGATGAGGACTCCTCTGCTCCTACTTTCACCATCACAGTAGACGCCAAAGCAGGGACAATGACG GGAGTGTCGGCGGCGGACAGAGCAAAGACGGTACTTGCTCTAGCAACTTCAAATTCCAGACCTGAAGATTTCAGGAAACCAGGGCATGTGTTTCCACTCA AGTATCGAAACGGAGGCGTTTTAAGAAGGGCTGGTCACACTGAAGCTTCGGTTGATTTAGTCATGCTGGCCGGCTTGCGGCCAGTTTCAGTCCTTTCAGC CGTGGTCGACCCTGACGACAGCTCCATTGCTTCCTTGGCAAGTCTCAGGAATTTGGCCGCAGAACATAATATACCAATTGTCTCGATTACCGACTTGATA AGGTACCGACGGAAGAGGGAGAAATTGGTGGAGAGGACGGGCATTTCTCGTCTACCAACAAAATTCGGTTTATTCGATGCTTATAGCTACAGGTCGAAAC TAGATGGTACGGAACACATAGCCGTTGTCAAGGGAGACATAGGAAATGGGGAGGATGTACTAGTGAGAGTGCACTCAGAGTGCTTAACGGGTGACATTTT CGGGTCGGGAAGATGCGACTGCGGAAACCAATTGGACATGGCGATGCGATTGATCGAGCAAGAAGGTCGAGGCGTGATGGTGTACCTTAGAGGACATGAA GGGAGAGGGATTGGCCTTGGTCATAAGCTACAAGCCTATAACTTGCAGGACATGGGGCATGATACAGTCGAAGCAAATATCGAGCTTGGTTTGGCCGTAG ATTCAAGGGAGTATGGCATTGGCGCACAGATATTAAGGGACATAGGGGTGAGGACAATGAGGCTGATGACGAACAATCCGGCTAAGTTCGTGGGGCTGAA AGGATACGGGTTGGCGGTGGTGGGGAGAGTTCCGGTGATGACTCCGATCACCGAGGAGAACAAGAGGTACTTGGAGACGAAACGGGTTAAGATGGGTCAC ATTTATGGGTCGGACCTTGAAGGGCCTTTGACTGGAGGCTTTGACCAGGGAATGCATAGAGATTCCATAGATTGGTTCTATCGATTTGCTGCAATGGCTC CTCCAAAAGATAACAAGCCGAAGCCAGATGCCAAGGCACAGGCAGTCAAAGCTGCAAAAGCAGTGAAGTCTGGTCCAACATTCAAGAAGAATGTGAAGAA GATCAGGACCAAGGTCACATTCCACCGTCCGAGGACATTGAAGTTGGAGAGGAACCCCAAGTATCCGAGGATTAGTGCACCTCCAAGGAACAAGCTTGAT CATTACCAGATCTTGAAGTTCCCTCTGACCACTGAGTCTGCGATGAAGAAGATCGAAGACAACAACACTCTGGTCTTCATTGTCGACATCCTTGCTGACA AGAAGAAGATCAAGGATGCCGTCAAGAAAATGTATGATATCCAGGCAAAGAAAGTCAATACCCTCATCAGGCCTGATGGAACCAAGAAGGCATACGTTAG GTTGACGCCTGACTACGATGCATTGGACGTGGCAAACAAAATTGGGATCATCTAA
AA sequence Show only first row Show all	>Lus10040865 pacid=23157667 polypeptide=Lus10040865 locus=Lus10040865.g ID=Lus10040865.BGIv1.0 annot-version=v1.0 MDSSALLPRATNFPRQVFPRNSLHPPPSYGGGSGATHCKCKTTQPRNRASSWTASAAGTQNGAAFDDTNPTPFGTVNAEITTDTIDFFVSDAEGDPDRPT PGYSSIDLALSTLHQGKFVIVVDDEDEAGVEGNLVMAASFTTAKNVAFMMKHGSGIVSVGMKEDDLVRLNLPLMSPETEDEDSSAPTFTITVDAKAGTMT GVSAADRAKTVLALATSNSRPEDFRKPGHVFPLKYRNGGVLRRAGHTEASVDLVMLAGLRPVSVLSAVVDPDDSSIASLASLRNLAAEHNIPIVSITDLI RYRRKREKLVERTGISRLPTKFGLFDAYSYRSKLDGTEHIAVVKGDIGNGEDVLVRVHSECLTGDIFGSGRCDCGNQLDMAMRLIEQEGRGVMVYLRGHE GRGIGLGHKLQAYNLQDMGHDTVEANIELGLAVDSREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVVGRVPVMTPITEENKRYLETKRVKMGH IYGSDLEGPLTGGFDQGMHRDSIDWFYRFAAMAPPKDNKPKPDAKAQAVKAAKAVKSGPTFKKNVKKIRTKVTFHRPRTLKLERNPKYPRISAPPRNKLD HYQILKFPLTTESAMKKIEDNNTLVFIVDILADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10040865 [exp]	0	1
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10012682 [exp]	4.6	0.7648
AT1G08580			unknown protein		Lus10040441 [exp]	6.2	0.7875
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	7.3	0.7795
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	7.6	0.7797
AT1G02160			Cox19 family protein (CHCH mot...		Lus10032273 [exp]	9.2	0.7590
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	13.0	0.7692
AT1G72690			unknown protein		Lus10008389 [exp]	28.6	0.7654
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	34.2	0.7230
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	36.6	0.7616
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	40.8	0.7514

Compare expression of checked genes

Lus10040865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.