Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59740 456 / 2e-162 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT3G46180 416 / 8e-147 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT2G02810 92 / 2e-21 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 91 / 1e-20 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT4G23010 60 / 3e-10 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005881 [exp] 545 / 0 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 93 / 2e-21 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10012848 [exp] 69 / 9e-13 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234800 [exp] 449 / 4e-160 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.016G139100 [exp] 83 / 5e-18 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 81 / 2e-17 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10040866 pacid=23157757 polypeptide=Lus10040866 locus=Lus10040866.g ID=Lus10040866.BGIv1.0 annot-version=v1.0 ATGGCTGATTCGGCGTCGTTAAGTGCTGTTAAGGAGAACAAGCTATGGAAAGGCGTCTTTGCCGTTGGAGGAATCATGATCACTCTCGTGATCTACGGTG TTCTACAGGAGAAGATCATGAGAGTTCCATACGGGGTTAATAACGAGTATTTTAAGTACTCTCTTTTCCTTGTATTCTGCAATCGAGTTACGACATCTGC TATATCGGCTATTTCTCTGGTGGCAAGTAAGAAGGCCTTGGATCCTGTTGCTCCAGTTTACAAGTATTGCCTCATATCAATCTCAAACATATTGACCACT ACATGCCAGTATGAGGCCCTCAAATATGTTAGTTTCCCCGTCCAGACACTTGCAAAGTGTGCCAAGATGATTCCTGTTATGATATGGGGAACTTTCATCA TGCAAAAGAAATACAAGGGAAAAGATTACTTGTTGGCCTTTCTGGTGACCATTGGTTGTTCAGTCTTCATTCTGTTCCCGGCAGGTAGTGATCTAAGTCC ATACAGCAGAGGAAGGGAAAATACTGTTTGGGGAGTTTCTTTGATGGCAGGTTATCTCGGGTTTGATGGGTTTACAAGCACATTCCAGGACAAACTATTC AAAGGATACGATATGGAAATACATAACCAAATTTTCTACACAACTTTGTGTTCGTGCTTTCTTAGTTTCACAGGTATGATACTACAAGGACATCTGCTAC TAGCAATAGACTTCATTTCTCGGCATCACGATTGCTTCCTTGACGTTGCATTGCTCTCTGCATTGGTGAGCATCTTGCTATCCTGCGTCTGGTTTTCCCA TCCTCTCAGCTGGGAGCAATGGATTGGAGCTGTAAGTCCTCGTGAAGTATTAGAAGAAGAAGGCGCTTTGATTCCCCCAAAGCAATGA
AA sequence Show only first row Show all	>Lus10040866 pacid=23157757 polypeptide=Lus10040866 locus=Lus10040866.g ID=Lus10040866.BGIv1.0 annot-version=v1.0 MADSASLSAVKENKLWKGVFAVGGIMITLVIYGVLQEKIMRVPYGVNNEYFKYSLFLVFCNRVTTSAISAISLVASKKALDPVAPVYKYCLISISNILTT TCQYEALKYVSFPVQTLAKCAKMIPVMIWGTFIMQKKYKGKDYLLAFLVTIGCSVFILFPAGSDLSPYSRGRENTVWGVSLMAGYLGFDGFTSTFQDKLF KGYDMEIHNQIFYTTLCSCFLSFTGMILQGHLLLAIDFISRHHDCFLDVALLSALVSILLSCVWFSHPLSWEQWIGAVSPREVLEEEGALIPPKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	0	1
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	2.6	0.9188
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	3.9	0.8938
AT4G16180			unknown protein		Lus10017062 [exp]	6.2	0.9106
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	6.9	0.9087
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	9.0	0.8846
AT1G73930			unknown protein		Lus10032474 [exp]	9.9	0.8898
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	12.2	0.8824
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	13.3	0.8873
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	14.1	0.8968
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	14.3	0.8907

Compare expression of checked genes

Lus10040866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.