Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28680 517 / 0 RmlC-like cupins superfamily protein (.1) AT1G07750 503 / 7e-180 RmlC-like cupins superfamily protein (.1) AT1G03890 121 / 9e-31 RmlC-like cupins superfamily protein (.1) AT1G03880 97 / 5e-22 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 92 / 1e-20 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT4G28520 86 / 4e-18 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28490 63 / 9e-11 RmlC-like cupins superfamily protein (.1) AT2G18540 59 / 3e-09 RmlC-like cupins superfamily protein (.1) AT3G22640 54 / 1e-07 PAP85 cupin family protein (.1) AT4G36700 47 / 1e-05 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005880 [exp] 673 / 0 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10015219 [exp] 566 / 0 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005438 [exp] 566 / 0 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 137 / 2e-36 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 135 / 1e-35 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 125 / 5e-32 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 121 / 2e-30 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 120 / 6e-30 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 120 / 6e-30 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102900 [exp] 538 / 0 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 535 / 0 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G402600 [exp] 310 / 4e-104 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) Potri.019G004500 [exp] 139 / 9e-37 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 136 / 5e-36 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 136 / 5e-36 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 135 / 1e-35 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 133 / 7e-35 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 123 / 2e-31 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 106 / 3e-25 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10040867 pacid=23157897 polypeptide=Lus10040867 locus=Lus10040867.g ID=Lus10040867.BGIv1.0 annot-version=v1.0 ATGGATGTTGATCTGTCACCAAAGTGGCCGAAGAATGTGTACGCAGGCGACAGCGGCTCCTACCACTCCTGGTCCCCCGACGACCTCGTCATGCTCCGCC GCGGAAACATCGGAGCCGCCAAGCTCTCCCTCCACAAGCACGGCTTATCCCTCCCTCATTACTCCGATTCCTCCAAGGTCGTCTACGTTCTCCAAGGAAA CGGTGTGGCAGGGCTTGTTCTACCGGAGAAGGACGAGAAGGTGGTCGGAATCAAGAAGGGCGACGCAATCGCGCTCCCATTCGGCACGGTGACGTGGTGG TACAACGATGAAGACATCGAGCTAGAAATTCTCTTCTTAGGAGACACCTCGAAGGGACACAATGCAGGTTCCTTCACCGATTTCTACCTAACCGGCTCCA ACGGCATCTTCACCGGCTTCTCGGCCGAATTCGTATCCCGAGCGTGGAATCTAGACGATACCTCCGTTACTTCCCTCGTAAGATCTCAATCGGAGAGAAT AATGATGCTGGATGGCAGCATCAAGTTCCCCGATCCAGTGAAGGCGGATCGCGATAGACTGGTGTCTAACTGCGAGGAAGCGCCGCTGGATGTCGACATC AATAGAGGAGGAAGGGTGGTTGTGTTGACCACCAAGAACTTGCCCTTGGTTGCCGAGATTGGGATCGGTGCTGATTTGGTGAAACTTGACGGTGGGGCGA TGTGCTCCCCTGGTTTTTCGAGCGACTCTGCATTGCAGGTGACTTACGTTGTGAGCGGGAGCGGCAGGATTCAAATTGTGGGTGTGGATGGGAAGAGGGT GTTGGACACAACTGTTGAGGCGGGGCAGTTGTTCGTGGTTCCGAGATTCTTTGTCGTTTCGAAGATCGGGGGTCCTGGCGGGATGTCGTGGTTCTCCATC CTCACCACCCCTGACCCACTATTCACTCACTTGGCAGGAAGGACCTCGGTGTGGAAGACATTGTCGCCGGCGGTGCTGGAGGCGTCGTTCAATGTGTCGT CTGAGGTTGAGAATATGTTCAGAAATAAAAGGGTTTCCGACGAGATTTTCTTCCCACCGCCATGTAAGTGA
AA sequence Show only first row Show all	>Lus10040867 pacid=23157897 polypeptide=Lus10040867 locus=Lus10040867.g ID=Lus10040867.BGIv1.0 annot-version=v1.0 MDVDLSPKWPKNVYAGDSGSYHSWSPDDLVMLRRGNIGAAKLSLHKHGLSLPHYSDSSKVVYVLQGNGVAGLVLPEKDEKVVGIKKGDAIALPFGTVTWW YNDEDIELEILFLGDTSKGHNAGSFTDFYLTGSNGIFTGFSAEFVSRAWNLDDTSVTSLVRSQSERIMMLDGSIKFPDPVKADRDRLVSNCEEAPLDVDI NRGGRVVVLTTKNLPLVAEIGIGADLVKLDGGAMCSPGFSSDSALQVTYVVSGSGRIQIVGVDGKRVLDTTVEAGQLFVVPRFFVVSKIGGPGGMSWFSI LTTPDPLFTHLAGRTSVWKTLSPAVLEASFNVSSEVENMFRNKRVSDEIFFPPPCK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	1.7	0.7387
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	2.8	0.7380
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	6.9	0.7019
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	11.1	0.7231
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	11.7	0.7298
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	12.6	0.7175
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	15.4	0.6884
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	16.7	0.7032
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	17.3	0.6213
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	17.6	0.6613

Compare expression of checked genes

Lus10040867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.