Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 392 / 8e-132 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT1G50520 323 / 2e-104 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT5G07990 320 / 8e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G42250 320 / 2e-103 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT3G20950 318 / 1e-102 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT4G15350 317 / 1e-102 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT2G14100 316 / 6e-102 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1) AT3G20940 313 / 1e-100 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT4G12320 312 / 2e-100 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT3G20140 310 / 1e-99 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005878 [exp] 924 / 0 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 470 / 4e-162 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10027798 [exp] 319 / 2e-105 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021158 [exp] 308 / 9e-99 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 305 / 9e-98 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10023827 [exp] 303 / 9e-97 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10017961 [exp] 302 / 2e-96 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10032223 [exp] 300 / 6e-96 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10042815 [exp] 300 / 1e-95 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037201 [exp] 562 / 0 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 561 / 0 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 540 / 0 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 480 / 5e-166 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 449 / 7e-154 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 349 / 1e-114 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G084800 [exp] 345 / 3e-113 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.006G057900 [exp] 345 / 4e-113 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G082900 [exp] 341 / 7e-112 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 341 / 7e-112 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040868 pacid=23157651 polypeptide=Lus10040868 locus=Lus10040868.g ID=Lus10040868.BGIv1.0 annot-version=v1.0 ATGATCGTCGAGCTCCTCTCCCTACTAGCCGTACTTTCCTTCTTCGCCCTAAACCTAGCTCGAAATGCTCGAAAAGACAAGAACCTCCCTCCAGGACCCA TGTCCCTTCCGGTCATCGGCCATCTCCACCTCATCGGACCACTAATTCACCACACCTTCCACGACCTCGCCTCGCGCTATGGCCCGCTCATGAACATCAA GCTCGGATCCATCTCGGCCATCGTTGTCTCCTCTCCGGACCTGGCTCGCGAGTTCCTCAAAACCCACGAGATCAACTTCTCGATGCGGGCCAGCACCATC GCCATCGACTACCTCACCTACAACAACATCTCCTTTGCCTTCGCACCCTACGGAGCTTACTGGAAGTTCATCAAGAAGATAAGCACGTTCGAGCTCCTCG GTAACCGGATGCTGAACCAGTTCCGTCCCATCCGGACCGAGGAGCTCCACAGCCTGCTGGAACTTCTAGGACAAAAGTCCCAAAGCCGTGGAAAAGTCAA CCTCAGCCAGGAACTGTTGAGGTTTGCCAACAACGTTATCTGCCAGATGATGTTGGGAATGCGTGCCTCGGGCACGGAAGGGCAGGCTGAGGTGGCGAGG GGGCTGGCCCGTGATGTGACACAGATATTCGGAGAGTTCAACGTGTCGGATTTCGTGTGGTTCCTTAAAAAATGGGACGTCCAAGGGTTTAAGAGGAGGT CGGAGGATATACGGCGGAGGTTTGATAACTTGTTGGAAGGGATTGTGGCGGAGAGGGAGAAAGTGAGGGCGGACGAGCGGCGGAGGAGTGACGCCGGCGG CAACAAGAGGGAAGCGGTGGATTTCTTGGATCTGATGTTGGACGTCATTGAGGATGAGGATGCGGAGATCAAGTTGACTAGAGATCACGTTAAAGCATTG GTCCTGGATTTCTTCACAGCAGGGACGGACACGTCAGCGGCGTCGCTAGAGTGGGCCCTATCGGAGCTAATAAACCATCCAAAGGTTCTCCGAAAGGCTC GGGAGGAGATAGACCGGGTGGTCGGGCCGACCCGGCTGGTGGAGGAATCCGACGGGCCGAACCTAATATACATCCATGCCGTGATCAAGGAGGCGTTCCG ACTCCACCCGTCGATTCCGATGATCACTAGGAAATGCGTGCAAGAGTGCGAGATCGGTGGGTACCGGATCCCGCTCAACTCGATGCTGTTCGTCAACATG TGGTCAATCGGGCGGAACCCGAAGTACTGGGACGACCCGATGGAGTTCCGACCCGAGCGGTTTTTGGACAGCCAGGTTGACATGAAAGGGCAGCACTACG AGCTGCTGCCGTTCGGGAGCGGGAGGCGGATCTGCGCCGGGATGGCGTTGGCGCTGCAGGAGCTTCCGGCGGCGCTCGCGGCGGTGATCCAGTGCTTCGA TTTCGAGGTGGTGGGCCCTGGGGGAGAGACTGTGAAGGGGGAGATGCCGGTTGATATGTCGGAGCGGCAAGGGTTGACAGTGCCGAAAGCGACGGATCTG GTGTGCGTGCCGATGGCGCGTGACGGGATTAATCTGGAGAGTTTGTTGTCGTCATCTGGTTAA
AA sequence Show only first row Show all	>Lus10040868 pacid=23157651 polypeptide=Lus10040868 locus=Lus10040868.g ID=Lus10040868.BGIv1.0 annot-version=v1.0 MIVELLSLLAVLSFFALNLARNARKDKNLPPGPMSLPVIGHLHLIGPLIHHTFHDLASRYGPLMNIKLGSISAIVVSSPDLAREFLKTHEINFSMRASTI AIDYLTYNNISFAFAPYGAYWKFIKKISTFELLGNRMLNQFRPIRTEELHSLLELLGQKSQSRGKVNLSQELLRFANNVICQMMLGMRASGTEGQAEVAR GLARDVTQIFGEFNVSDFVWFLKKWDVQGFKRRSEDIRRRFDNLLEGIVAEREKVRADERRRSDAGGNKREAVDFLDLMLDVIEDEDAEIKLTRDHVKAL VLDFFTAGTDTSAASLEWALSELINHPKVLRKAREEIDRVVGPTRLVEESDGPNLIYIHAVIKEAFRLHPSIPMITRKCVQECEIGGYRIPLNSMLFVNM WSIGRNPKYWDDPMEFRPERFLDSQVDMKGQHYELLPFGSGRRICAGMALALQELPAALAAVIQCFDFEVVGPGGETVKGEMPVDMSERQGLTVPKATDL VCVPMARDGINLESLLSSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	0	1
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	1.0	0.9397
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	1.4	0.9239
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	2.4	0.8791
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	2.4	0.9042
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	2.8	0.9034
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	5.5	0.8625
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	7.5	0.8629
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	8.1	0.8834
AT2G36885			unknown protein		Lus10013829 [exp]	8.5	0.8603
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	8.5	0.8724

Compare expression of checked genes

Lus10040868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.