Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07740 485 / 9e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G18475 191 / 7e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 191 / 1e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G46100 179 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 178 / 4e-49 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 171 / 6e-48 unknown protein AT5G64320 171 / 3e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 169 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 163 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 165 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005877 [exp] 413 / 1e-144 AT1G07740 212 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005876 [exp] 385 / 5e-134 AT1G07740 256 / 5e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042452 [exp] 185 / 4e-53 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 191 / 5e-53 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 183 / 7e-52 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 174 / 4e-49 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005989 [exp] 175 / 9e-49 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026218 [exp] 174 / 1e-48 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 166 / 6e-45 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204100 [exp] 546 / 0 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G020501 [exp] 219 / 5e-70 AT1G07740 218 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 200 / 1e-58 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 187 / 2e-53 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 186 / 3e-53 AT4G01400 576 / 0.0 unknown protein Potri.012G031600 [exp] 179 / 2e-50 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G075900 [exp] 179 / 2e-49 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 176 / 6e-49 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 177 / 3e-48 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G234500 [exp] 173 / 6e-47 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040869 pacid=23157869 polypeptide=Lus10040869 locus=Lus10040869.g ID=Lus10040869.BGIv1.0 annot-version=v1.0 ATGCTTCCAATTTCAAGAGCAATCAAATGGCACACCCAATCCCACTCTTCCCGTGGTGTTAGATTGTACAGAACTTTCCATTCCCAGAAAGCAAAATCCA AAACTCAAAATCCTGACCATTCACAGAGCCGGCGGCAGCGGCGGCACCGGAAAAACATACCATTCGTCACTGCCGTGAAGGAAACCGAAGACCCAGAAGA CGCATTGGCGCTCTTTAGCGAGTACACTCAAATGGGGATCAAACACGACTACCCTTCTTACTCGGCTATCATCTACAAGCTCGCTCGCTCTCGCAACTTC AAAGCTGTCGAGGATGTTCTTGGTCAATTGCAAGCTAGTAACATTCGATGTGGGAGTGAGAAAATCTTCATTGCTCTATTCGATCATTACGGGAAATCCG GGTTGTCCGCTAATGCAGTCAAGCTGTTCGAGAAAATGCCAAAGTTTAACTGCGAAAGAACGTCACAGTCTTTTAACGCTCTGTTGAACGTTCTCGTCGA CAGCGACCGTTTGGAGGAGGCGAACAAGCTGTTTGAAAAGTCAAACAAGTTTCGGATCCGTATGAATTCAGTGCCGTTCAATATAATGATCAAAGGATGG CTGGGAAAAAAAGACTGGGATCGCGCACGCCAGGTGTTCGACGAAATGCTCGAGAGAAAAATCGAACCGAGCGTTGTGACTTACAACAGCCTCATCGGCT ATCTATCTCGAAACAGCGAAGTTGGCAAGGCGAGAGAGCTCTTCGACGAAATGATTTCGAAAGGGAAGCGACCGAACGAGGTGACATATGCTTTATTAAT GGAAGGATTGTGCTCCATTGGCGATCATAAGGAGGCGAGGAAGTTGATGTTCGATATGGAATATCGAGGGTGTAAGCCGAAAGTTTTGAACTTTGGGATC TTGATGAGCGATCTAGGGAAGCGAGGCAAGATCAAGGAAGCGAAGGCTTTGCTTGTCGAAATGAAGAAGAAGAGGAAGTTGAAGCCGGATGTTGTAACGT ATAATATATTGGTGAACTGTCTGTGTAAAGAAGGGACAGTGGATGAAGCTTATAATGTGTTGCTGGAGATGGAGGTGGGAGGGTGCAAGGCGAATGCGGC GACGTATAGGATGGTGGTTGATGGATTTTGCAGGGAGGGGGATTTCGAAGGTGGGTTGAGAGTGTTGACTGCGATGTTGAGTAGTAAGCATTTCCCAAGA ACCGAGACGTTTGTGTGTATGGTTAGAGGATTGCTGAAGTCTGGGAATGTTGGAGGAGCTGGGTTTGTGTTGGAGGAGATGAGTAAGAGGAAACTGGGAT TGGAATGGGATGGATGGGAGGATCTAGTGAAGGATTCGTGTCGGAGTGACGAACATTCGGGTGAACTTGTGAATCGAGTGATTGAGGGATGCGAATGA
AA sequence Show only first row Show all	>Lus10040869 pacid=23157869 polypeptide=Lus10040869 locus=Lus10040869.g ID=Lus10040869.BGIv1.0 annot-version=v1.0 MLPISRAIKWHTQSHSSRGVRLYRTFHSQKAKSKTQNPDHSQSRRQRRHRKNIPFVTAVKETEDPEDALALFSEYTQMGIKHDYPSYSAIIYKLARSRNF KAVEDVLGQLQASNIRCGSEKIFIALFDHYGKSGLSANAVKLFEKMPKFNCERTSQSFNALLNVLVDSDRLEEANKLFEKSNKFRIRMNSVPFNIMIKGW LGKKDWDRARQVFDEMLERKIEPSVVTYNSLIGYLSRNSEVGKARELFDEMISKGKRPNEVTYALLMEGLCSIGDHKEARKLMFDMEYRGCKPKVLNFGI LMSDLGKRGKIKEAKALLVEMKKKRKLKPDVVTYNILVNCLCKEGTVDEAYNVLLEMEVGGCKANAATYRMVVDGFCREGDFEGGLRVLTAMLSSKHFPR TETFVCMVRGLLKSGNVGGAGFVLEEMSKRKLGLEWDGWEDLVKDSCRSDEHSGELVNRVIEGCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10040869 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	8.7	0.8106
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	9.6	0.8362
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	16.1	0.8129
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	20.1	0.7855
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	20.1	0.7816
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	22.0	0.8053
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	23.0	0.7946
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	25.1	0.7912
AT5G06550			unknown protein		Lus10016202 [exp]	31.0	0.7813
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	33.2	0.7969

Compare expression of checked genes

Lus10040869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.