Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28660 109 / 4e-28 Chloroplast-targeted copper chaperone protein (.1) AT2G37390 103 / 5e-26 NAKR2 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) AT5G02600 100 / 3e-24 NPCC6, NAKR1 nuclear-enriched phloem companion cell gene 6, SODIUM POTASSIUM ROOT DEFECTIVE 1, Heavy metal transport/detoxification superfamily protein (.1.2) AT3G53530 96 / 4e-23 NAKR3 SODIUM POTASSIUM ROOT DEFECTIVE 3, Chloroplast-targeted copper chaperone protein (.1.2) AT3G24450 85 / 4e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 65 / 4e-13 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT3G56891 64 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1) AT3G56240 62 / 6e-12 ATX1, CCH copper chaperone (.1) AT5G27690 65 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G05365 56 / 3e-10 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005875 [exp] 454 / 3e-162 AT2G28660 109 / 4e-28 Chloroplast-targeted copper chaperone protein (.1) Lus10024435 [exp] 101 / 1e-24 AT2G37390 144 / 2e-41 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10025294 [exp] 97 / 4e-23 AT2G37390 141 / 3e-40 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10017730 [exp] 71 / 6e-15 AT3G24450 134 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1) Lus10043444 [exp] 62 / 7e-12 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10032445 [exp] 64 / 2e-11 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10028859 [exp] 62 / 2e-11 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3) Lus10033250 [exp] 60 / 2e-10 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10008284 [exp] 59 / 3e-10 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234700 [exp] 146 / 6e-42 AT2G37390 114 / 2e-30 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.006G213900 [exp] 113 / 3e-29 AT2G37390 127 / 2e-35 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.016G080400 [exp] 108 / 1e-27 AT2G37390 133 / 2e-37 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.018G076400 [exp] 79 / 6e-18 AT3G24450 151 / 4e-48 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G023800 [exp] 64 / 5e-13 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.010G236500 [exp] 64 / 7e-13 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3) Potri.006G024800 [exp] 61 / 3e-11 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 61 / 3e-11 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G149500 [exp] 60 / 1e-10 AT2G18196 257 / 9e-89 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 57 / 4e-10 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10040870 pacid=23157746 polypeptide=Lus10040870 locus=Lus10040870.g ID=Lus10040870.BGIv1.0 annot-version=v1.0 ATGGAGATCTTCTGCAAATCCCCCTCTTCCACCGCCATCTGCTCCAGCCTCGACCACCGCTCCATGGTTCGCCACCATTACCACTCCGCACCTTCCACTC CCAAGCTTACACCCATCTTCGCCCCCTGTTCTTCTTCTCACAATCTCATTCCCGCCGATAACCTCCGCCGCCGGAGCACTTCCGCCGTCGCTATTACCGA CCTCTACAAGAAACCCTCCTCTGCCTCCGATAAGCCAAAACAGAGCACCTCCTCCTCCGACCTCCTGCTGCGCAGGAGGAGCTCCGCCGACGTCGCAGAC CTTCTCCGCCTACGCCACCGCCGCCACCACTCCCGCTCCGAATCCTCCGCTCATCTCCTCACCCACGATGCACCGGCGGCGGCTGGCGGTCATCAAAACC GCAACAAAATCAAGCTGAATAGCTCCGTCTATGATTACGCTCCCGTCCGTGAAAACGAACGCCGCCATTCCTCCGCCGTTGCTGCCTCCGGTGACTACCT CCCGAAACGAACCGAATTGATCGGTTGGGTGAGATCTGAGTCGTCATACAAAAACGACGCAGTTTTGGAAATCACTCCGGCAGCACAAGCAGAGAATAAT AATAATACTCAGTTAGTCAAATCCCAAGATTTCCCTCCGGTCTGGAAATCTTCTTCCCCCACCCGTCCTCCCGACGTTCAGGTGGTGGAGTTGAGGGTGT CGATCCATTGCAAAGGATGCGAAGGGAAAGTGAGGAAGCACATCTCCAAAATGGAAGGGGTCACGTCGTTCAGCATTGATGTGGCGACGAAGAAGGTTAC AGTGAAGGGGAACGTGACAGCCATGGGTGTACTGTCCAGCATCTCCAAAGTGAAGAGTGCACAGCTCTGGTCCACGTCGGATTTGCCGCCGCGGCCGCCG CCGGCGAGATGCTAA
AA sequence Show only first row Show all	>Lus10040870 pacid=23157746 polypeptide=Lus10040870 locus=Lus10040870.g ID=Lus10040870.BGIv1.0 annot-version=v1.0 MEIFCKSPSSTAICSSLDHRSMVRHHYHSAPSTPKLTPIFAPCSSSHNLIPADNLRRRSTSAVAITDLYKKPSSASDKPKQSTSSSDLLLRRRSSADVAD LLRLRHRRHHSRSESSAHLLTHDAPAAAGGHQNRNKIKLNSSVYDYAPVRENERRHSSAVAASGDYLPKRTELIGWVRSESSYKNDAVLEITPAAQAENN NNTQLVKSQDFPPVWKSSSPTRPPDVQVVELRVSIHCKGCEGKVRKHISKMEGVTSFSIDVATKKVTVKGNVTAMGVLSSISKVKSAQLWSTSDLPPRPP PARC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	0	1
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	3.9	0.8903
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10039907 [exp]	5.6	0.8982
AT1G32860			Glycosyl hydrolase superfamily...		Lus10008277 [exp]	10.4	0.8815
AT5G62170			unknown protein		Lus10031666 [exp]	12.4	0.8832
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	19.9	0.8920
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	23.7	0.8832
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	24.5	0.8607
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	25.4	0.8727
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	26.5	0.8661
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	27.9	0.8882

Compare expression of checked genes

Lus10040870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.