Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59730 502 / 2e-171 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G39380 482 / 3e-163 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT1G07725 476 / 2e-161 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G55150 470 / 9e-159 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09520 455 / 6e-153 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT2G28640 451 / 1e-151 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT3G09530 420 / 3e-139 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28650 387 / 3e-127 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 314 / 2e-98 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 303 / 3e-94 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004917 [exp] 1018 / 0 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 761 / 0 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10005436 [exp] 759 / 0 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 483 / 2e-163 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10025291 [exp] 478 / 2e-161 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040329 [exp] 466 / 2e-157 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 424 / 2e-141 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 398 / 4e-131 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 396 / 1e-129 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 661 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 644 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.006G214300 [exp] 536 / 0 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.010G212400 [exp] 503 / 2e-171 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 482 / 1e-163 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G166400 [exp] 318 / 9e-100 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 311 / 3e-97 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 303 / 4e-94 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 300 / 9e-93 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.013G152900 [exp] 278 / 7e-85 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10040872 pacid=23157862 polypeptide=Lus10040872 locus=Lus10040872.g ID=Lus10040872.BGIv1.0 annot-version=v1.0 ATGAGGTCGAATTTCTTCAAATCCCCGTCACCGTCACCACACCACTCGCCGGCAGCTTCTCCGCCGCCTCGCCACGCCTTCTCCGAGACACTGATAGAGG AGGACATCGAAAACGCACACTCGATCATCTCCAAATATGACTCATCCGACAATTCTGCTTCTTCCCCCTCCTCGTCGACTTCTCTCTTCTCCGACGACCG AATCGAAGCCAAGAAGTATCTCTCCGCCGTGAAGGAGCTCCAGTCGGCTATGCAGTATTACGTCGCTAGCTATCCAAACTCCGAAAACCTCGTCCGAGCT CAGAACCTGATGCAGAAGGCCATGAAGAAGCTCGAGAGGGAGTTCTATTTGATTCTCAGATCTAGCCGCGATCATCTCGATTCTGAGTTCGTCTCCTCCC GCGCCTCTGTCGCCACTAGCAGAGCTAGGCCTTCCACTGTTTCTTCTGGATCGGACGATTCATCGTCCGATGCGGATGAGTCGACAGTGGGCGGAGAAGA TATTCCGGTGGAGGAGCGTGCCTCGATTGCTGCAATTTCCGATCTGAAGGCGATTGCTGATTGTATGATTGCTGCCGGATATACCAAAGAGTGTATCAAG ATTTATCACATCGTCAGGAAATCGGTGGTCGACGAAGAACTGTACCGATTAGGAATCGACAGATTCACCTCGTCTCACCTCCACAAGCTCGATTGGGAGG CTATGGAGTCGAAAATCAAGACGTGGCTGTACGCCGTGAAGACCGCCGTCAGGACTCTGTTCCGCGGCGAGAGGCTACTCTGCGACCAAGTTTTCTCGTC GTCCTCTTTAGCGATTCGAGAGTCCTGCTTTGTGGAGGTCGTTCGAGAAGGGGCGATGGATCTGTTTGGCTTCCCTGAAAATGTCATCAAGAAGGGGAAA AAAATTACTTTGGAGAAAATGTTCCGCACTCTGGACATCTACGAAGCAATTTCAGATCTCTGGCCGGAAATTGAATCGATTTTCGATTTCGAATCCACCG CTCCGGTTCGGAATTTGGCGGTTAACTCTCTGGTGAAGCTCGGTGACGTCGTCAGAACGATGCTAACAAATCTGGAAACTGCGATTTCGAAGGACAATTC GAAGACGTCAGTTCCCGGCGGCGGACTCCATCCTCTTACTCGTTATGTTATGAATTACATCTCCTTTCTCAGCGATTACACCGGAGCGCTTTCCGATATA CTCGCTGATTGGCCGTTGGAGATGACGCCTATGCCGGAGACGTACTTCGCCAGCCCTGGCCCCGCCGACGATGTTAACGGCGTTACCTCTCCCGTTTCCG TCCGATTAGCTTGGCTGATCCTTGTCCTGCTCTGTAAACTCGACGGCAAGGTCCAATTCTACAACAACGTCCCACTCTCCTACCTGTTCTTAGCGAACAA TCTCTGCTACATAGTGAACAAGGTCCGCACGTCGAGCATCAAATTCCACCTCGGCGACGAGTGGATCGACAAGCACGAAGCTAAAGTGAAGCAGTACGCC GCGAATTACGAGCGGCTCGGGTGGGATAAAGTAATGTCGTCGCTGCCTGTCGACACTACGGCGGCGACGATGACAGTTCAGGAAGCGGCGGATTGCTTTC GGAAATTCAACTCTGCTTTCGAGGAGGCGTACAGAAAGCAGTCATCGTGGGTGGTGCCGGACTCAAGACTGAGAGACGATATAAAAATCTCGGTGGCGAG GAAAATCGGCCCGGCGTACCGGAGATTCTACGAGAAGTATCGGACGGCGGTGGCAAGGGAGTTAGGTGGAGTTGTCAGATATGCCCCTGACGATTTGGAT AATCATTGGTCGGACTTGTTTTACGGAAAGGTGGGAGATGGGAGCGTTTCGACGAGTTATTCCTCTTCGGTTCGGTCGTCGGTTTCTTCCGGATCGAATC ACTAG
AA sequence Show only first row Show all	>Lus10040872 pacid=23157862 polypeptide=Lus10040872 locus=Lus10040872.g ID=Lus10040872.BGIv1.0 annot-version=v1.0 MRSNFFKSPSPSPHHSPAASPPPRHAFSETLIEEDIENAHSIISKYDSSDNSASSPSSSTSLFSDDRIEAKKYLSAVKELQSAMQYYVASYPNSENLVRA QNLMQKAMKKLEREFYLILRSSRDHLDSEFVSSRASVATSRARPSTVSSGSDDSSSDADESTVGGEDIPVEERASIAAISDLKAIADCMIAAGYTKECIK IYHIVRKSVVDEELYRLGIDRFTSSHLHKLDWEAMESKIKTWLYAVKTAVRTLFRGERLLCDQVFSSSSLAIRESCFVEVVREGAMDLFGFPENVIKKGK KITLEKMFRTLDIYEAISDLWPEIESIFDFESTAPVRNLAVNSLVKLGDVVRTMLTNLETAISKDNSKTSVPGGGLHPLTRYVMNYISFLSDYTGALSDI LADWPLEMTPMPETYFASPGPADDVNGVTSPVSVRLAWLILVLLCKLDGKVQFYNNVPLSYLFLANNLCYIVNKVRTSSIKFHLGDEWIDKHEAKVKQYA ANYERLGWDKVMSSLPVDTTAATMTVQEAADCFRKFNSAFEEAYRKQSSWVVPDSRLRDDIKISVARKIGPAYRRFYEKYRTAVARELGGVVRYAPDDLD NHWSDLFYGKVGDGSVSTSYSSSVRSSVSSGSNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	0	1
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	1.4	0.9241
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	1.7	0.8987
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	2.0	0.9204
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	8.7	0.8518
AT2G35612			unknown protein		Lus10033285 [exp]	8.8	0.8128
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	9.6	0.8967
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	12.2	0.8893
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	12.6	0.8509
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	15.0	0.8406
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	15.9	0.8551

Compare expression of checked genes

Lus10040872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.