Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 507 / 3e-179 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 488 / 9e-172 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 375 / 2e-127 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G01120 281 / 6e-90 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G25450 270 / 5e-86 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G16280 269 / 2e-85 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 267 / 5e-85 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G46720 263 / 6e-84 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G19440 263 / 4e-83 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 261 / 1e-82 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004918 [exp] 583 / 0 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 569 / 0 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 565 / 0 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10023458 [exp] 375 / 4e-127 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 374 / 1e-126 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 337 / 1e-112 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 337 / 3e-111 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 300 / 5e-98 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 301 / 2e-95 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026800 [exp] 546 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 515 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 400 / 2e-137 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 387 / 3e-132 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 356 / 4e-120 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 345 / 5e-116 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 339 / 8e-114 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.008G048500 [exp] 313 / 4e-105 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 270 / 6e-86 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.008G160000 [exp] 265 / 5e-84 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10040873 pacid=23157847 polypeptide=Lus10040873 locus=Lus10040873.g ID=Lus10040873.BGIv1.0 annot-version=v1.0 ATGGTGTTCCAAGGCCGGGAAGAGACTCCCACTCTCCAGGACGGGATCCAAGAGATGGACGAGTTCTTCCACTCCACCATCGACAAGCTCCTGGAACGAT CCGGAATCTCGCCTCAGGAGATCGACCTCCTGGTTGTTAATATCTCGATGCTTGCTGCCGTTCCGTCGCTCAGCTCGAGGATTGTGAATCACTACAAGAT GCGGGAGGATGTCAAGACGTTTAATCTCACGGGTATGGGGTGTAGCGCTAGCTTGATTTCGACTGGCATTGTGTCGAACACCTTCCGTGCGTACAAAAAC AGAGTCGCCTTAGTCATCACTTCGGAATCTCTGTCTCCGAATTGGTACGCCGGGAACGACAAATCCATGATTTTGGCTAACTGTTTGTTCAGAACCGGCG GATGTGCGATTCTGTTGACGAACAAGCCGGAGCTGAAGCACCGTTCGATGTTCAAGCTCAAGACTCTGGTCAGGACTCACCATGGAAACAGAGACGAGTC GTTTGGTTGCTGCATCCAGAAGGAAGACGAACAAGGCAGATTAGGTTTCCATTTGGGGAAAACTCTGCCGAAGGCAGCCACCAGGGCCTTCGTCGACAAT TTGAAGGAGATTTCGCCGAAGATCCTTCCGGTGAGGGAGCTGATCAGGTTCTTGTTCGTCTACTCGATGAGGGCGTTAGCCAAACGCGTTCCCGGAGGAG GCGGCGGCCCGCCGCCGCCGCCTGTGATTAATTTCAAAACCGGAGTGGATCATTTCTGCATACACACGGGAGGGAAAGCGGTGATCGACGGGATAGGATT GAATCTCGAGCTGAGCGAGTACGATCTGGAGCCGGCGAGGATGACGTTGCACCGGTGGGGGAACACGTCGGCGAGCAGCTTGTGGTATGTGCTGGCGTAC ATGGCGGCAAAGCGGCGGGGGGGGGCGGGGTGGGGGGGGGGTGGGGCGGGAATGATAAGTTTCGGGGCAGGGTTCAAGTGTAACAGCTGTCTGTGGGAGG TGATGAGGGATCTGGGTGGTGCGGCCGGATCCGGACCCGGGTCGGGCTGTGGGGCGACGGTGTGGGACGACTGCATTGAAAGCTATCCACCGGAGTCGTT GGCCAACCCATTCATGACAAAGTACGGGTGGATTAACGACGAGGATCCCGCCACTTTTGTGCTTCCTGAGGAAAACCCAGTCAGGTAA
AA sequence Show only first row Show all	>Lus10040873 pacid=23157847 polypeptide=Lus10040873 locus=Lus10040873.g ID=Lus10040873.BGIv1.0 annot-version=v1.0 MVFQGREETPTLQDGIQEMDEFFHSTIDKLLERSGISPQEIDLLVVNISMLAAVPSLSSRIVNHYKMREDVKTFNLTGMGCSASLISTGIVSNTFRAYKN RVALVITSESLSPNWYAGNDKSMILANCLFRTGGCAILLTNKPELKHRSMFKLKTLVRTHHGNRDESFGCCIQKEDEQGRLGFHLGKTLPKAATRAFVDN LKEISPKILPVRELIRFLFVYSMRALAKRVPGGGGGPPPPPVINFKTGVDHFCIHTGGKAVIDGIGLNLELSEYDLEPARMTLHRWGNTSASSLWYVLAY MAAKRRGGAGWGGGGAGMISFGAGFKCNSCLWEVMRDLGGAAGSGPGSGCGATVWDDCIESYPPESLANPFMTKYGWINDEDPATFVLPEENPVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	0	1
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	1.4	0.9462
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	1.7	0.9399
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	2.0	0.9330
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	3.2	0.9244
AT2G42760			unknown protein		Lus10019924 [exp]	3.5	0.9172
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	4.0	0.9003
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	4.7	0.9401
					Lus10017791 [exp]	5.5	0.8923
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	8.5	0.8862
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	9.9	0.9017

Compare expression of checked genes

Lus10040873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.