Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46220 956 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004920 [exp] 1384 / 0 AT3G46220 963 / 0.0 unknown protein Lus10000152 [exp] 260 / 3e-82 AT3G46220 176 / 3e-52 unknown protein Lus10000127 [exp] 218 / 9e-67 AT3G46220 126 / 1e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234300 [exp] 1071 / 0 AT3G46220 978 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09743 [flax] [poplar] E3_UFM1_ligase E3 UFM1-protein ligase 1
Representative CDS sequence Show only first row Show all	>Lus10040874 pacid=23157705 polypeptide=Lus10040874 locus=Lus10040874.g ID=Lus10040874.BGIv1.0 annot-version=v1.0 ATGGACGCAGAACTGCTCCAATTGCAGCAACAGTTCGAGTCTGCGCCGCAAGCGAAATCTAGTATTCGGATATCGGAAAGTAACGTCGTGGAGCTGGTAC AGAAGCTACAGGAGCTTCACATCATTGACTTCGACCTTCTCCACACCGTCTCCGGCGAAGAGTACATCACAACTGATCAATTGCGGCGGGAAATTGTGGC GGAAGTGAAAAGATCAGGACGCGTTTCACTGATAGACCTTTCTGATGTTATCGGTGTTGATCTGTATCATGTTGAGAAGCAAGCTCAACATGTCATTTCC GGTGATCCTGAGTTCATGTTGCTTCAAGGAGAGATTATATCTCAAACCTACTGGGATAATGTTGCAGAAGAGATCAACGAGAGGCTTCAAGAATGCAGCC AAATTGCTTTGGCAGAAGTTGCTGCACAGTTAAATGTCGGTTCCGAATTTGTGTCGTCTATGTTGGAGGCTCGCCTGGGAACTCTGGTGAAAGGTAGGCT TGAAAGAGGACAGCTATACACGCCTGCTTATGTTACTAGAGTTAGTGCGATGGTCCGTGGTGCTGCAAGGGCTATTACTGTACCGACGAACTTGTCTCTT CTTTGGAGCAATTTACAGACGCTGCTGCATGAAATGGATGGAGCTAGTGGAGTTGCTATAGAGAGTTCATTCTTCCAGTCCATGTTTAATTCGCTGTTGA AAGAAGGAGAGGTTCTCGGATCACTTCGTGCTGGAGTTCATTGGACACCAACTGTCTTCGCTAATGCTCAAAAGGAATGTGTAGATTCAATGCTTTCACA GAATTCTTTTGTTAGCTATGACGCCTTGCAAAAACTTGGTATCGCACAGGCTCTGCAGTTTTTACAGTCCAGATATCCCGAGGGAATACCATTGGTTGCA GCATTTGTGCACCCATCCTTAATTGAGATATTAGATACTGCCATTGAGGATGCTGTTGACCGTGGTAGTTGGATCGATTCTCTTTCTGTATTACCTACAT CATTTGGGTCCCAAGATGCATCCAAGATTCTGTCACTTTGTCCTTGTCTTCAGTCAGCTCTCAAGAATAACAAAGGACTCATGTTGGGGGATTCATTTGT GTTCAGCAACACTTTCCTCAAGGATCTCTATGATCCTGTTGAGAAGGAAGCAGAGAAGTTTGTTCTCTCAGGCTCTTCTGTTGCTACGGTAACTGACGAG CCGGTGAAGGAAACTAAAGGTTCCAGCAGATCTACCGAGTTAAATGAAACTGTTAATGACAGGAAAAAGAAAAAGGGGAAATCTTCTGGATTAAAAGCAG AAGAAAGCGTTACAGAAGATGATCATGTTCCAATAAAGGGAAAGAAAAACCAAAGGAAAGGAAAGGCTGCTGCATCAAGTCAAGTACCAGACACAAAAGC CGGACCGAAGAAAGATCCTGCTAAGGTGCAGGAGGGGAATGAAGTCTACCCTTCAGAAGAATGGATTATTGAAAAGATACTGTTCTTGATTCCGGTTTTT GAACAGCAAGGTGTAGAGGATCCACAGACTATACTGAAACCAATAGCGAATCATATGAGACCTTTGCTGATAAACTTTTTGAAGGAGAGAAGAAAGACAT TGCTTACAGAAAATGCCGAGCAGATGAAACGGGTGCTTAGTAATTTGCAGAAGAAACTCGAAGAGCCTTTCTTATATATACAGCTGTATGAAAACGCTCT AGACTTATTTGACGACGACCAATCAACTTCAGTGATTTTGCATAAGCATTTACTAAGAACAATGGGTGCTCCAATGACAGATCTTCTTCTCCATAACTTG GATGTGCACAACAAATTGAAGAACGGAATCTCAGTTGAAGAATCTTCAGAAGTTGGAACATTGACTTCTACAGAAAGGACATCTATTGTAAGAGCCTCCT CCGGCCCTGGTTTTAGAAATATGACATTAATCAGAAGTTCCCCGAAGGATTACGATCCAGTTCTCACTATATTCTTGCTTCTCGTACAGGCCAAAGGTCT TCCAGGATCCCTATCGAAGAAAGCTCAAACGCTTATAGAAGCTTTAGAAGGAAAGCTTGTTGAAGGATTCACGAGTTCACTTCGGGACACCGCCGAGGAG AGTGGGTTATACTTGAAACAACTTGACAAGAAGTTGGAGAGAACGATTCTCCATTCTTATCGCAAGGATTTGACAGCTCAAGTGTCTGCAGAAACTGATC CAGTTGCACTTCTTCCTAAAGTTGTCTCCCTTCTTTATATTCAGATCCACAATAAAGCTCTCCAGGCTTCTGGACGTGCCATTTCTATTGCAGTTTCTCG ATTGAAGGATAAATTGGATGGTCCAGCGTACAAGATTCTCACGGATTACCAAACTGCAACCGTTAAACTCTTGGCTCTTTCATCTGCTGCAACTGGTGAT CATGGCTCGTCATTGACGGCGGCATTTCTTTACCTTTGTGAGCAGGAAGAAGACTGTACATCGGATAGAATCTTGAGCAAAAGGGAGCTTCTTGAGAGCC TGATGCCTCAGTTGAAGGGCCTTGTTCTGAGTCCTTCATCCTCGCAGACACAATCCTAA
AA sequence Show only first row Show all	>Lus10040874 pacid=23157705 polypeptide=Lus10040874 locus=Lus10040874.g ID=Lus10040874.BGIv1.0 annot-version=v1.0 MDAELLQLQQQFESAPQAKSSIRISESNVVELVQKLQELHIIDFDLLHTVSGEEYITTDQLRREIVAEVKRSGRVSLIDLSDVIGVDLYHVEKQAQHVIS GDPEFMLLQGEIISQTYWDNVAEEINERLQECSQIALAEVAAQLNVGSEFVSSMLEARLGTLVKGRLERGQLYTPAYVTRVSAMVRGAARAITVPTNLSL LWSNLQTLLHEMDGASGVAIESSFFQSMFNSLLKEGEVLGSLRAGVHWTPTVFANAQKECVDSMLSQNSFVSYDALQKLGIAQALQFLQSRYPEGIPLVA AFVHPSLIEILDTAIEDAVDRGSWIDSLSVLPTSFGSQDASKILSLCPCLQSALKNNKGLMLGDSFVFSNTFLKDLYDPVEKEAEKFVLSGSSVATVTDE PVKETKGSSRSTELNETVNDRKKKKGKSSGLKAEESVTEDDHVPIKGKKNQRKGKAAASSQVPDTKAGPKKDPAKVQEGNEVYPSEEWIIEKILFLIPVF EQQGVEDPQTILKPIANHMRPLLINFLKERRKTLLTENAEQMKRVLSNLQKKLEEPFLYIQLYENALDLFDDDQSTSVILHKHLLRTMGAPMTDLLLHNL DVHNKLKNGISVEESSEVGTLTSTERTSIVRASSGPGFRNMTLIRSSPKDYDPVLTIFLLLVQAKGLPGSLSKKAQTLIEALEGKLVEGFTSSLRDTAEE SGLYLKQLDKKLERTILHSYRKDLTAQVSAETDPVALLPKVVSLLYIQIHNKALQASGRAISIAVSRLKDKLDGPAYKILTDYQTATVKLLALSSAATGD HGSSLTAAFLYLCEQEEDCTSDRILSKRELLESLMPQLKGLVLSPSSSQTQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46220			unknown protein		Lus10040874 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	2.0	0.8852
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	4.9	0.8745
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	4.9	0.8438
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	5.5	0.8503
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	6.0	0.8112
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10021991 [exp]	11.2	0.7981
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	11.2	0.8434
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	13.0	0.8417
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	13.9	0.8113
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	15.8	0.8109

Compare expression of checked genes

Lus10040874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.