Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07705 607 / 0 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 575 / 0 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1) AT1G07700 42 / 0.0006 Thioredoxin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004921 [exp] 810 / 0 AT5G59710 681 / 0.0 VIRE2 interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349400 [exp] 749 / 0 AT1G07705 765 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.017G065900 [exp] 707 / 0 AT1G07705 716 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04153 [flax] [poplar] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Lus10040875 pacid=23157803 polypeptide=Lus10040875 locus=Lus10040875.g ID=Lus10040875.BGIv1.0 annot-version=v1.0 ATGAACAATGTTCCTTCTGGTGCAGTTCAACAACCCACTGGTAGCCTTTCTAGTGGACGGTTCACATCCAATAATCTTCCGGTGGCTCTATCTCAGTTAT CTCACGGAGCTTCACATGGACATTCAGGAGTAACCAACAGAGGAGGTATAAGTATTGTAGGAAATCCTGGCTTTAGTAGTAACACAAATGGGATTAGTGG TTCTATTCCTGGTATTCTCCCCACCTATGCAGCAATTGGTAACCGGGATTCTGTTCCAGGATTGGGAGTGTCCCCAATTTTGGGAAATGCAGGTTCTCGG ATTACAAGCTCCATGGGCAACATGGTTGGAGGGGGCAACATTGGTAGAAGCTTAAATTCGGGTGGAGGATTATCTATGCCCGGGCTTGCATCTCGTCTAA ACCTAAATGCAAATAGTGGATCTGGGAGCCTAAGTGGACAGAATCGATTGATGGGTGGTGTTCTTCCACAAGGAAATCCTCAAGTGATGTCTATAATAGG GAACTCCTATCCTAGTGGCGGTGGACCACTTTCTCAAAGCCATGTGCAAGGAGTGAACAGCCTTAGTTCTATGGGAATGTTGAATGATGTGAACTCCAAT AACAGCTCTCCTTTTGACATAAACAATGATTTCCCTCAATTGACAAGTCGACCCAACTCCGCAGGAGGACCTCAAGGGCAACTGGGTTCACTGCGTAAGC AAGGTCTTGGAGTAAGTCCCATTGTTCAGCAAAACCAAGAGTTCAGTATACAAAATGAAGATTTCCCAGCTTTACCTGGATTTAAAGGGGGTAATGCTGA TTATCCTATGGACAGGCACCAGAAAGACCAATTGCATGACAATACAATGTCAATGATGCAGTCTCAGCACTTCTCTATGGGGAGATCTTCAGGATTCAAC TTAGGCGGTACATACCCTTCATATCGTCCACAGCAACAGCAGCAACATGCTCCAGCTGTCAGTAGTAGCGGCGTCTCATTCTCGGGAGTCAACAATCAAG ATCTTCTCCATGGTTCAGATATATTTCCATCCTCTCATTCGAACTACCAATCACAGAACAATGGACCACCTGGGATGGGATTGAAACCTCTAAGTTCAGC AAATTCAGTATCTGGCATTGGATCGTACGATCAACTTATTCAGCAGTATCAGCAACACCAAGGGCAGCCGCAATTTAGACTGCAGCAAATGTCAGCTGTG AATCAGTCGTTTAGGGATCAAGGCATTAAAACCATGCAAGCACCATCGCCTACTGAAGACTTTGGCTTACTTGGTCTGTTATGTGTCATACGGATGAACA ATCCCGAGCTGACATCTCTGGCTCTCGGAATTGACTTGACAACACTTGGACTGAACTTGAACTCCGCTGAAAACCTTCATAAAACGTTTGGCTCTCCGTG GTCTGATGAGCCAGCGAAGGGTGATCCCGAGTTCAGTGTGCCTCAGTGTTATTACGCCAAGCAACCGCCTACTTTACATCAAGGGTACTTCTCAAAGTTC ACCTTGGACACGCTGTTCTACATATTCTACAGCGGGGAGCCGCTGGTTAAGACGGCAACTTACGAGAGAGGCTCTTATCACTGCTTCGATCCAAACTCAT TCGAAATAATCCGCAAGGATACTTTCGTATTGTCGTACGAATTGGTGGAGAAGAGACCAGTTCTGCCTCAACATTAA
AA sequence Show only first row Show all	>Lus10040875 pacid=23157803 polypeptide=Lus10040875 locus=Lus10040875.g ID=Lus10040875.BGIv1.0 annot-version=v1.0 MNNVPSGAVQQPTGSLSSGRFTSNNLPVALSQLSHGASHGHSGVTNRGGISIVGNPGFSSNTNGISGSIPGILPTYAAIGNRDSVPGLGVSPILGNAGSR ITSSMGNMVGGGNIGRSLNSGGGLSMPGLASRLNLNANSGSGSLSGQNRLMGGVLPQGNPQVMSIIGNSYPSGGGPLSQSHVQGVNSLSSMGMLNDVNSN NSSPFDINNDFPQLTSRPNSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYPMDRHQKDQLHDNTMSMMQSQHFSMGRSSGFN LGGTYPSYRPQQQQQHAPAVSSSGVSFSGVNNQDLLHGSDIFPSSHSNYQSQNNGPPGMGLKPLSSANSVSGIGSYDQLIQQYQQHQGQPQFRLQQMSAV NQSFRDQGIKTMQAPSPTEDFGLLGLLCVIRMNNPELTSLALGIDLTTLGLNLNSAENLHKTFGSPWSDEPAKGDPEFSVPQCYYAKQPPTLHQGYFSKF TLDTLFYIFYSGEPLVKTATYERGSYHCFDPNSFEIIRKDTFVLSYELVEKRPVLPQH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	0	1
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	1.0	0.8801
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	4.5	0.8586
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	5.7	0.8674
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	7.6	0.8679
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	10.0	0.8656
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	10.2	0.8516
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	15.4	0.8525
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	21.4	0.8194
AT3G09180			unknown protein		Lus10021276 [exp]	21.4	0.7602
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	26.5	0.8566

Compare expression of checked genes

Lus10040875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.