Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004924 [exp] 87 / 1e-22 AT3G18960 81 / 1e-18 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040877 pacid=23157889 polypeptide=Lus10040877 locus=Lus10040877.g ID=Lus10040877.BGIv1.0 annot-version=v1.0 ATGGATTTTTTGCCGTTTCCCTGTTCGATGAAATGCGTGAGCAGCTTCCTCGTGACGATATTCAAACCCAATGGATCAGAAACTCGATATCCCCCTCGCA ACTTGGCCAACGGATCGGACACTGGGTTTGAAGCAGATCCGACTCCCAATGCAGCCAACGGATCGAACGCGGATAGTGCTATAGAAATCGAGGATGGCGA GGATGAAGAAGATCCTGCTGGCAGTGCTGTCGAAATCGAGGATGACGAGGATGAAGATTGGGTTCCCGACTCGAGGCGAGCGATCCCAGAGGGAATGTCG GTGCAGGAGAGAGCTTGA
AA sequence Show only first row Show all	>Lus10040877 pacid=23157889 polypeptide=Lus10040877 locus=Lus10040877.g ID=Lus10040877.BGIv1.0 annot-version=v1.0 MDFLPFPCSMKCVSSFLVTIFKPNGSETRYPPRNLANGSDTGFEADPTPNAANGSNADSAIEIEDGEDEEDPAGSAVEIEDDEDEDWVPDSRRAIPEGMS VQERA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040877 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	7.9	0.7122
AT4G10320			tRNA synthetase class I (I, L,...		Lus10025306 [exp]	9.5	0.6480
					Lus10023200 [exp]	16.4	0.6160
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	36.2	0.6093
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	37.9	0.6002
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	41.0	0.6002
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	41.4	0.5328
					Lus10007677 [exp]	43.5	0.5828
					Lus10026928 [exp]	43.8	0.6002
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10010205 [exp]	45.0	0.5102

Compare expression of checked genes

Lus10040877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.