Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29950 100 / 9e-25 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G50010 40 / 0.001 bHLH sequence-specific DNA binding transcription factors;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004927 [exp] 371 / 4e-129 AT1G29950 126 / 6e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10004926 [exp] 257 / 4e-86 AT1G29950 130 / 4e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080000 [exp] 140 / 1e-40 AT1G29950 140 / 8e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G080100 [exp] 42 / 1e-05 AT1G29951 53 / 1e-11 conserved peptide upstream open reading frame 35 (.1) Potri.017G048000 [exp] 44 / 7e-05 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.007G112800 [exp] 43 / 0.0002 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G103300 [exp] 41 / 0.0005 AT5G50010 98 / 4e-23 sequence-specific DNA binding transcription factors;transcription regulators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040879 pacid=23157826 polypeptide=Lus10040879 locus=Lus10040879.g ID=Lus10040879.BGIv1.0 annot-version=v1.0 ATGTACTTAGGGGCAAAGAGACTCAGAGAACAGAAGGAAATAGGGAAGACTAATATGATTGTTGGGGCTGTTGCGTATTACCGAGTGATGCAAATTTGTC AGAGAAACCGGTTTCTGATGCATAGAGATCAAAGGTTCCACCCAAAGGCAGTGCCCCGAGTTGCCTATCAAGCGGGTGATAACTACACGAATCTTCCGGT TCCATCTTCCTTTCCCGAGGTGCTACCTCCACCAATCTATGGTGTTGAATTTCAGCCATCCGAGACCTGCCCAGAGAATTTCGTGATTGTGGATCAGACA GATCACCGCAGCCAAATCATGTTCAATCCTGCATTTGCTCACAAATTCCCTGGTCCCAATTTCAACAGTTCAGGTTCCTCAAGGTTCATGAACGACAGCT TTCCGAGGAAAGATGTCCTCAAGTTAGAAAAAGAATTGTCAGTCCTGAAGGAAGATTCTGATGATATTGATGCACTGTTAAGCCTGGATGACATTAGTGA CAATGACGAGGACGAAGATGAAGATGAGGTGAGCACAGCCAGGACATATGGAACGTACGGGAGCAGCTCCCCGGAATCTTGCTCCAACTACAACTACACC AATGCTTGCTCATCTTCTGCTCAAAAGTCTTCCGGTGGAAGTAGCAGCGAGAAGAAACAGCTGAAGATGAAGAAGATGGTTAAGGCACTGAGGGGCATCG TTCCTGGTGCGGACCAAATGAATACCGTAACTGTTATAGATGAAGCAGTCAGGTACCTAAAATCTCTCAAGGTTGAAGCCGAGAAGCTTGGAGTAGGGAA TTTGGAAGACTACAACTAA
AA sequence Show only first row Show all	>Lus10040879 pacid=23157826 polypeptide=Lus10040879 locus=Lus10040879.g ID=Lus10040879.BGIv1.0 annot-version=v1.0 MYLGAKRLREQKEIGKTNMIVGAVAYYRVMQICQRNRFLMHRDQRFHPKAVPRVAYQAGDNYTNLPVPSSFPEVLPPPIYGVEFQPSETCPENFVIVDQT DHRSQIMFNPAFAHKFPGPNFNSSGSSRFMNDSFPRKDVLKLEKELSVLKEDSDDIDALLSLDDISDNDEDEDEDEVSTARTYGTYGSSSPESCSNYNYT NACSSSAQKSSGGSSSEKKQLKMKKMVKALRGIVPGADQMNTVTVIDEAVRYLKSLKVEAEKLGVGNLEDYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	0	1
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	2.2	0.8094
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	7.6	0.7127
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	8.7	0.7720
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	16.4	0.7975
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	20.3	0.7772
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	20.4	0.6848
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	22.4	0.7617
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	26.6	0.6713
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	27.7	0.7311
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	31.5	0.6891

Compare expression of checked genes

Lus10040879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.