Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59090 162 / 1e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004930 [exp] 551 / 0 AT3G59090 237 / 6e-75 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203600 [exp] 198 / 3e-60 AT3G59090 362 / 2e-124 unknown protein Potri.002G058500 [exp] 187 / 3e-56 AT3G59090 330 / 9e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10040880 pacid=23157722 polypeptide=Lus10040880 locus=Lus10040880.g ID=Lus10040880.BGIv1.0 annot-version=v1.0 ATGTCTGAAGCTTCTTCTTCGTTGTGTTGCCTCCGCCCTGGAGTATTGGCTGTCAATGTAGGTCTTGCTTCCGTCGACGCCATTATCGCCCTGCTCTCAT TCTATCAGCAGATCTATGGTGTAAATGAGTTGAACCTAATGTATGTTTGGTGTGTTTTTAGGATTGACCTTTGTCATCAGGCAGATGATGAAGATTACGA GGAAGAAGACTTTAGCTTTCATGAACCTTTGTTGGAACTGTCCTTAGAACATGGAGAGTCTCGTAGGTCATGTTTGCCTTTCCGCTCCATCCGTGTTGGA AGTCGTCAAAGGGTTGTGATTTTGGTGATTATTCTAGCATTTCTCTCAACACTGATATGTGCAGCACTATTGTGGATAGACAAGAGCAACAACATTACTC ATTCATCAATATTGGCTGTGGTCTATCAAGATATATTTGATGCAGTAATGCTAGTGCTTGGTGGAACATTGGCTTGTTACGGCCTTATATTATGCTTGAA AATGAGACGAGTGAGATCAGAGAGAGCTGCCTCAGATATTTGGAAGGTAGCAGGATTGGCAGTTGTAGCTGTTATATGTTTCACTTCAAGTGCTATTGTT TCGTTTTTGTCTAATATTCCGGTTCTTTACAACTGGCACAACCTCGATGGAAATTGTCTTCTTACTTCTGTTTTGTTGATACTGTACTTCTTCATAGGTT CTTCAGTACCCTCAGCAGTTCTGTTGTGGATAATGAGAGATCTTCCACCACCTTTAGTATCTAGTGTGCCCGAAGAATCGACGACGATTACCTTTGTTCG AGATGATAATGCAGGAGTAATACACAATCCTCAACGCTGGACTACACCGGCAAGTTCACCAAATCAGGTTCCAATTTCTACCCTCTCCGGCTTTTCTGCA TGCCATATAGCTATTGAAAATCAGACACATTTGCATGATACTGAATGTGGATTGACTTGCCAGCGTGGCGAGAAGCAACGACCATTGCTGTCTGAAGAAT CGAGGCAACGAATTTCGGGATCAAGAAGTTCCTCCTCATCCGGCAACAAATCCGACAACAGATTCTTGGACTAG
AA sequence Show only first row Show all	>Lus10040880 pacid=23157722 polypeptide=Lus10040880 locus=Lus10040880.g ID=Lus10040880.BGIv1.0 annot-version=v1.0 MSEASSSLCCLRPGVLAVNVGLASVDAIIALLSFYQQIYGVNELNLMYVWCVFRIDLCHQADDEDYEEEDFSFHEPLLELSLEHGESRRSCLPFRSIRVG SRQRVVILVIILAFLSTLICAALLWIDKSNNITHSSILAVVYQDIFDAVMLVLGGTLACYGLILCLKMRRVRSERAASDIWKVAGLAVVAVICFTSSAIV SFLSNIPVLYNWHNLDGNCLLTSVLLILYFFIGSSVPSAVLLWIMRDLPPPLVSSVPEESTTITFVRDDNAGVIHNPQRWTTPASSPNQVPISTLSGFSA CHIAIENQTHLHDTECGLTCQRGEKQRPLLSEESRQRISGSRSSSSSGNKSDNRFLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59090			unknown protein		Lus10040880 [exp]	0	1
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	2.2	0.9739
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	2.8	0.9724
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	5.0	0.9629
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009486 [exp]	5.7	0.9587
					Lus10004293 [exp]	5.9	0.9612
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	6.3	0.9654
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	7.9	0.9582
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	11.5	0.9563
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	12.1	0.9507
AT3G59090			unknown protein		Lus10004930 [exp]	13.5	0.9309

Compare expression of checked genes

Lus10040880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.