Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 565 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 521 / 3e-172 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 456 / 1e-147 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G17630 450 / 1e-145 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 450 / 1e-145 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 431 / 2e-138 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 401 / 2e-126 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 378 / 4e-118 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 331 / 3e-100 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 293 / 3e-86 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004932 [exp] 1651 / 0 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 1018 / 0 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 577 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 577 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 433 / 6e-139 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 427 / 3e-136 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10039138 [exp] 395 / 2e-123 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 376 / 3e-117 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017541 [exp] 327 / 3e-97 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131300 [exp] 805 / 0 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 574 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 477 / 3e-155 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G004800 [exp] 466 / 1e-151 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.001G096320 [exp] 464 / 3e-151 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 464 / 4e-151 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.013G142301 [exp] 463 / 7e-151 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G189100 [exp] 452 / 3e-146 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 445 / 9e-144 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G102700 [exp] 431 / 1e-138 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040881 pacid=23157856 polypeptide=Lus10040881 locus=Lus10040881.g ID=Lus10040881.BGIv1.0 annot-version=v1.0 ATGGATATAAACGCAGAGCAAAGCACGTATCTTCCACCTGACCGTCCCGGCGTCCGATGCTTAGTCGTGAATATCACCGCCAGCAGCGGGCTATGGCAGA GCGAGAATCCCCTGACTCAAGCTCTTCCCATCCTGGCGATGCAGCTCGCCACCGTCATCTTGGTCACCCGCACCCTTCAGTTCCTCTTCAAACCCTACCA CATCCCTCACATCGTCGCCAATATTCTGGGAGGGATTTTGGTTGGCCCGACGTTATTAAGCAGAACCAGGTATTTTCAAACAATATTTCCGATGAGGGCG ATTACACTCGTCGAAACGGTAGCGTATTGGGCGTTGACCTGCCACGTGTTCCTCCTCGGACTGGAAACCGACGTCGCCTCCGTCCTCCGCGCCGGGAGAA AAGCGGTCCACGTCGCCGCCGTGGGCGTTCTCTTCCCACTCTCCGTCTGTAGCGGTTTATTCTTTCTGATAGATTCATCAAACCCCGCTGACAGCAGGAA TAAGTTCATATACTTCGCCGCGCCGTTAGGAATGACAGGATTCCCGGTGGTTTCCCGGATACTCGTCGATCTGAAGCTGATCCACAGCGATCTCGGCCGA TTGGCAATGTCATGTGCTCTCGTGGAGGACTTAGTCGGATGGATTTTTGTCATCATTCTGATTCCTTACACCGTCAGCACAGCGAACGTGTTCATGGCCA TACCGGCGACCGTCGCCTTCATCTTGTTCTGCGTCTACGCCGTTCGTCCTGTTCTGGCTATTATAATCCGCCGCACAGCTCGAGGTAACAACATAAACGA GCACTACCTCAGCTTCATTATGGTCTCTGTTTCGTTGTTTGCCTGCAGTACGGAGATCCTCGGAACCGGGTCCCTGGTCGGAGCTTTTGTTTACGGGGTT ATAATGCCGGACAGAATCCTCGCCGGAATGCTTGCTGATAAGTTCGACGATTTCATGTCCGGCTACTTGCTTCCTCTATACTTCGTCTGTTGCGGGATGA GGGTAGACTTATCCTCGGTCGCCGAGTACTGGGTTGGAGCCATCTTCATTGTGTTACTTTCTTGCTCGCTTAAAGTAATCGGAGCTCTAATCACCACCGC CAGATACAATATCCCACGACGAGACGCTTTTGCACTTGGAATGCTGTCCAACACTAAAGGCATCTTGGCCTTGTTCATCGCAAACCTCGCCGTTGATCTA AACATTATGGCCGTACGTGAATTTTCTACTCTGGTCCTCTGCCTTATGATCATGACAGCTATATCCGGTCCGGTAGTGGCTAACATGTACCGGCCAGCCA AGCGTCTGTCACATTACAAGCAGAGGACAATCCAGCAAGGAACCCCAGACTCGGAACTCAGAATCCTAGCTTGCTTCCATGGCCCTTACAACATATCAGG AATGATCAACCTCTTTGATTCCTCCACAACAACGAAAGACTCCACTCTCAATGTCTTCGCCCTCCACCTCGTCGAGCTCACCGGCCGAGCCTCAGCAATG CTGATAGTTCACACCCCGGGGAAAGGCCGGGGCCACAAGGATGCTAACTCGGAACAGATCGTCACAGCATTGGAAACTTTCGCCAGCCTCAACGACTCGA TCGAAGTCCACCCACTGACCGCACTGTCGCCATTCATCACAATGCACGACGACATCTGTAGTCTGGCTGAAGACAAGAAGGTAGCTTTCGTGATCTTGCC GTTCCACAAGCCTCCGACTCGAGATGGGAAGCTTGACGAAGAAGGTGGGAGCACCTCGTTTCGGGGCGTTAACCTCAACGTCCTTGGGAATGCTCCTTGC ACCGTGGGCATATTTGTGGATAAAGGATACGGAGAGAGCACGAACGACGATGACGATGATGCCTGCAGGAAGCGTCAGGTGGCGTTGCTCTTCTTCGGTG GACAGGACGATCGCGAGGGTCTGTCTTACGCTTCGAGGATGGCAGCCAGCGGGGTGGTGCATCTTCACGTCGTCAGGTTCCAACCTAGCATCGATTTGAA TCAACACATCGACGGAATGGAGATCCCAGGAGGAGCCGGAGGAGGAGACGAATATGGCGGGCTGGTGACCGCGTCAGCATACATAGAAAGGCAGAACAAG CTAGACGAGATGTGCATCAACGATTTCAGGCTAAGAACAGCAGGCCACGAAACGATCTTCTTCGAAGAGAAGCGCGTGAGCGGCGAAGAAGAAGTGGTCT CCACGCTCAAGGAAATGGCCAGGACCTTACGAATCAACCTCTTCGTAGTCGGCAAAGGAGAAGGAATGCTCCAGCCGCTCACAGCAGCACTCGTCGACTG GTGCGAGTACCCCGAACTAGGACCCGTTGGGGACGCACTGGCGACCATGAACGACTCGCGAAGCTCAGTCCTCGTGGTGCAACGGTACATCGGACCAGAG GAGGATGACGAGGAAGGTGGGGGACGCCATGAACACGCGGTAGATGTCCACGAAGCTGCCTCGGAGCATTCGAGGGAGCATCTGGGGAAGTGGCAGGCGC CTGGTGATGATTCTGAGCATGGTAGTAGTAGCCTTGAGATGCAGGCGTTTGCCAAGCGTAAACGTGACGATGGGATCGATGATTTCAAATCTGGATACTG A
AA sequence Show only first row Show all	>Lus10040881 pacid=23157856 polypeptide=Lus10040881 locus=Lus10040881.g ID=Lus10040881.BGIv1.0 annot-version=v1.0 MDINAEQSTYLPPDRPGVRCLVVNITASSGLWQSENPLTQALPILAMQLATVILVTRTLQFLFKPYHIPHIVANILGGILVGPTLLSRTRYFQTIFPMRA ITLVETVAYWALTCHVFLLGLETDVASVLRAGRKAVHVAAVGVLFPLSVCSGLFFLIDSSNPADSRNKFIYFAAPLGMTGFPVVSRILVDLKLIHSDLGR LAMSCALVEDLVGWIFVIILIPYTVSTANVFMAIPATVAFILFCVYAVRPVLAIIIRRTARGNNINEHYLSFIMVSVSLFACSTEILGTGSLVGAFVYGV IMPDRILAGMLADKFDDFMSGYLLPLYFVCCGMRVDLSSVAEYWVGAIFIVLLSCSLKVIGALITTARYNIPRRDAFALGMLSNTKGILALFIANLAVDL NIMAVREFSTLVLCLMIMTAISGPVVANMYRPAKRLSHYKQRTIQQGTPDSELRILACFHGPYNISGMINLFDSSTTTKDSTLNVFALHLVELTGRASAM LIVHTPGKGRGHKDANSEQIVTALETFASLNDSIEVHPLTALSPFITMHDDICSLAEDKKVAFVILPFHKPPTRDGKLDEEGGSTSFRGVNLNVLGNAPC TVGIFVDKGYGESTNDDDDDACRKRQVALLFFGGQDDREGLSYASRMAASGVVHLHVVRFQPSIDLNQHIDGMEIPGGAGGGDEYGGLVTASAYIERQNK LDEMCINDFRLRTAGHETIFFEEKRVSGEEEVVSTLKEMARTLRINLFVVGKGEGMLQPLTAALVDWCEYPELGPVGDALATMNDSRSSVLVVQRYIGPE EDDEEGGGRHEHAVDVHEAASEHSREHLGKWQAPGDDSEHGSSSLEMQAFAKRKRDDGIDDFKSGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	4.2	0.9585
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	6.0	0.9564
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	6.0	0.9522
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	7.0	0.9561
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10017049 [exp]	11.9	0.9381
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	12.6	0.9641
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	15.4	0.9466
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	15.9	0.9537
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	18.1	0.9598
AT1G13140		CYP86C3	"cytochrome P450, family 86, s...		Lus10032085 [exp]	18.5	0.9264

Compare expression of checked genes

Lus10040881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.