Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 763 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 468 / 8e-162 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT2G04540 269 / 5e-85 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025390 [exp] 797 / 0 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 758 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001814 [exp] 679 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 671 / 0 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 621 / 0 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 493 / 3e-171 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 458 / 1e-158 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10014622 [exp] 271 / 9e-86 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 257 / 1e-79 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079700 [exp] 780 / 0 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 778 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 686 / 0 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 666 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 485 / 3e-168 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 476 / 1e-164 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.002G219500 [exp] 259 / 3e-81 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040883 pacid=23157613 polypeptide=Lus10040883 locus=Lus10040883.g ID=Lus10040883.BGIv1.0 annot-version=v1.0 ATGCAAGCTCTCCAATCCTTGCACTCCCCTTCCCTCCGCTCCCTCCACCGCAACCAACCCACCAACCCGACTCGACCCACATTCTCCTCCTCCGCCAGGA GGAGAACAACAAATCCACCCGTCATCACCGCCGCCGCCAACAATGTCAACGTCGCATCCCCGAAGCGGGAGACGGACCCGAATAAGCGGGTCGTAATCAC GGGCATGGGCTTGGTATCCGTGTTCGGCAACGACGTCGACGCTTACTACGACAAGCTGCTCTCCGGGGAGAGCGGGATCACTCTCATCGACCGGTTCGAC GCTTCCAAATTCCCCACACGGTTCGCCGGCCAGATCCGCGGATTCGCTGCTCAGGGCTACATTGATGGCAAGAACGATAGGAGGCTCGACGATTGCTTGA GGTATTGCATTGTGGCTGGCAAGAAGGCCCTCGAGGATGCCGACCTTGGTGGCGATAAGCTCTCCCAGATTGACTTGCAGAAAGCTGGTGTGCTCGTCGG AACAGGAATGGGAGGTCTCACAGTGTTTTCGGATAATGTTCAGGCTCTAATCGAGAAAGGACACAGGAAAGTCTCCCCATTTTTCATCCCTTACTCTATA ACCAACATGGGTTCTGCTTTGCTGGCGATTGAACTCGGTTTCATGGGACCGAACTACTCGATCTCAACTGCTTGCGCTACCTCGAATTATTGCTTCTATG CTGCCGCTAACCATATTCGCCGAGGTGAGGCTGATTTGATGATTGCTGGTGGAACCGAGGCTGCAATTATTCCTGTTGGACTTGGGGGTTTCGTAGCGTG TAGGGCTTTGTCGCAGAGGAACGATGATCCGAAAACTGCTTCGAGGCCGTGGGACAAAGATCGAGATGGCTTTGTTATGGGTGAAGGTGCAGGAGTCTTG ATTATGGAGAGTATGGAACATGCGATGAAGCGTGGTGCAAACATCGTTGCCGAATACTTGGGAGGCGCTATTAACTGTGATGCTTACCATATGACTGATC CAAGAGGGGATGGGCTTGGCGTTTCTACGTGTATTGAAAGATGTCTTGAAAATGCTGGTGTGTCACCTGAAGAGGTTAACTACATAAACGCTCACGCAAC CTCCACCCTTGCTGGTGACCTTGCGGAGGTAAACGCTATAAAGAAGGTTTTCAAGAACACTTCAGAGATCAAAATCAACGCAACCAAGTCTATGATAGGT CACTGTCTTGGAGCTGCTGGAGGTCTAGAAGCGATAGCAACGGTGAAGGCCATAAACACAGGATGGCTTCATCCTTCCATCAACCAATTTAATCCGGAGC CTTCAGTGGAGTTTAACACAGTAGCCAACGAGAAGCAGCAGCATGAAGTGAATGTTGCCATTTCAAATTCGTTTGGATTTGGAGGACACAACTCAGTCGT CGCCTTTTCTACATTTAAGCCTTGA
AA sequence Show only first row Show all	>Lus10040883 pacid=23157613 polypeptide=Lus10040883 locus=Lus10040883.g ID=Lus10040883.BGIv1.0 annot-version=v1.0 MQALQSLHSPSLRSLHRNQPTNPTRPTFSSSARRRTTNPPVITAAANNVNVASPKRETDPNKRVVITGMGLVSVFGNDVDAYYDKLLSGESGITLIDRFD ASKFPTRFAGQIRGFAAQGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGGDKLSQIDLQKAGVLVGTGMGGLTVFSDNVQALIEKGHRKVSPFFIPYSI TNMGSALLAIELGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGTEAAIIPVGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVL IMESMEHAMKRGANIVAEYLGGAINCDAYHMTDPRGDGLGVSTCIERCLENAGVSPEEVNYINAHATSTLAGDLAEVNAIKKVFKNTSEIKINATKSMIG HCLGAAGGLEAIATVKAINTGWLHPSINQFNPEPSVEFNTVANEKQQHEVNVAISNSFGFGGHNSVVAFSTFKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	1.0	0.9416
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	1.4	0.9060
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	2.6	0.8932
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	2.8	0.8999
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	3.5	0.8937
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	7.7	0.9029
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	9.4	0.8434
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	9.5	0.8816
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	9.5	0.8856
AT2G44640			unknown protein		Lus10043347 [exp]	9.7	0.8973

Compare expression of checked genes

Lus10040883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.