Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34460 386 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 115 / 2e-28 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37660 81 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 70 / 7e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 56 / 1e-08 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 55 / 4e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46780 54 / 4e-08 PTAC16 plastid transcriptionally active 16 (.1) AT2G33590 50 / 8e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 45 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 43 / 0.0002 HCF173 high chlorophyll fluorescence phenotype 173 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004936 [exp] 499 / 3e-180 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 118 / 1e-29 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 115 / 1e-28 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 73 / 2e-14 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 71 / 9e-14 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037912 [exp] 57 / 7e-09 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007308 [exp] 56 / 2e-08 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029255 [exp] 56 / 3e-08 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10038638 [exp] 55 / 3e-08 AT5G18660 574 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079600 [exp] 394 / 1e-138 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 120 / 1e-30 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 117 / 3e-29 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 117 / 3e-29 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G086800 [exp] 74 / 9e-15 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 64 / 2e-11 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G244800 [exp] 58 / 2e-09 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.008G204900 [exp] 58 / 3e-09 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G037000 [exp] 57 / 8e-09 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.004G061200 [exp] 55 / 4e-08 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10040884 pacid=23157736 polypeptide=Lus10040884 locus=Lus10040884.g ID=Lus10040884.BGIv1.0 annot-version=v1.0 ATGGCCACAACGCCATTGATCGTCAAGAGCTATCCTCTGTCATCGTCGTGGAAGTCTCTAAACCCATCCCGCCATTGCTCCTCCACGAAAAGCTTTCATC TTCCTCTCCTCTTCCTTTCTTCCAAATCCACACCCATCAGGATGGCGGCGGCGAACAGTAGCAGTGAGATCACAGAGGAGAAGAGTAGCAGCAGTAATGT CGTGGAAAAGAAGAAGACGGTGTTCGTAGCTGGAGCAACTGGAAGCACTGGGAAGAGGATTGTTGAGCAGCTTCTATCAAAAGGGTTTGCAGTGAAAGCT GGAGTTAGGGATGTTGACAAGGCCAAATCCGCCCTTTCCAAGGACAACCTATCTCTTCAATTCGTGAAAGCAGACGTTACCGAAGGGTCAGTCAAGCTAG CAGAGGCCATAGGTGAAGATTCTGATGCTGTGATATGTGCCACCGGGTTTCGACCCGGTTGGGACCTCTTGGCTCCATGGAAGGTTGATTACTATGGCAC CATAAATCTAGTAGATGCTTGCAGGAAACAAGGTGTTGACAGGTTCGTCCTGGTCAGCTCCATTCTGGTGAACGGAGCTGCGATGGGTCAGCTACTCAAC CCGGCTTACGTGTTCCTCAACATCTTCGGGCTGACATTGGTAGCAAAGCTCCAGGCTGAGGGTTATATCAGGAAGTCTGGGATTAACTACACCATTGTTA GACCCGGCGGGCTGAAGAACGATCCTCCGTCCGGAAACCTGGTCATGGAACCTGAGGATACACTTTCCGGAGGCTCAATTTCGAGAGATGTGGTGGCTGA AGTAGCGGTTGAGGCGTTGACTTGTAAGGAATCGTCGTACAAAGTGGTGGAGATAGTGTCTCGTCCCGAAGCACCGAAGCGTTCGTATGAGGATCTCTTT GGGTCCATTAAAGCAAAGTAG
AA sequence Show only first row Show all	>Lus10040884 pacid=23157736 polypeptide=Lus10040884 locus=Lus10040884.g ID=Lus10040884.BGIv1.0 annot-version=v1.0 MATTPLIVKSYPLSSSWKSLNPSRHCSSTKSFHLPLLFLSSKSTPIRMAAANSSSEITEEKSSSSNVVEKKKTVFVAGATGSTGKRIVEQLLSKGFAVKA GVRDVDKAKSALSKDNLSLQFVKADVTEGSVKLAEAIGEDSDAVICATGFRPGWDLLAPWKVDYYGTINLVDACRKQGVDRFVLVSSILVNGAAMGQLLN PAYVFLNIFGLTLVAKLQAEGYIRKSGINYTIVRPGGLKNDPPSGNLVMEPEDTLSGGSISRDVVAEVAVEALTCKESSYKVVEIVSRPEAPKRSYEDLF GSIKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10040884 [exp]	0	1
AT1G05140			Peptidase M50 family protein (...		Lus10035276 [exp]	1.7	0.8829
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	6.6	0.8713
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	7.4	0.8442
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	14.7	0.8452
AT5G24460			unknown protein		Lus10032931 [exp]	16.9	0.7886
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	31.6	0.8449
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	32.0	0.7816
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	32.2	0.8209
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	34.7	0.8399
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10001653 [exp]	35.5	0.8170

Compare expression of checked genes

Lus10040884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.