Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53000 146 / 2e-43 AtCKS, KDSB CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G48450 57 / 3e-11 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G63270 56 / 7e-11 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G55850 56 / 2e-10 NOI RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) AT5G40645 55 / 2e-10 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G04410 52 / 2e-09 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G17660 51 / 5e-09 RPM1-interacting protein 4 (RIN4) family protein (.1) AT4G35655 50 / 2e-08 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G25070 47 / 2e-06 RIN4 RPM1 interacting protein 4 (.1) AT5G19473 39 / 0.0002 RPM1-interacting protein 4 (RIN4) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014797 [exp] 170 / 2e-52 AT1G53000 496 / 3e-179 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10012316 [exp] 57 / 4e-11 AT5G55850 87 / 4e-24 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10006361 [exp] 57 / 4e-11 AT5G55850 73 / 7e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10022524 [exp] 56 / 2e-10 AT2G04410 104 / 2e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10016623 [exp] 55 / 2e-10 AT2G04410 105 / 1e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10025949 [exp] 54 / 7e-10 AT2G17660 87 / 2e-24 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10014574 [exp] 53 / 1e-09 AT5G55850 76 / 1e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10032112 [exp] 54 / 2e-09 AT5G55850 80 / 1e-20 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10022776 [exp] 46 / 4e-06 AT3G25070 155 / 4e-47 RPM1 interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G120100 [exp] 156 / 3e-47 AT1G53000 485 / 3e-175 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.001G400900 [exp] 147 / 7e-44 AT1G53000 481 / 1e-173 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.011G094200 [exp] 60 / 1e-11 AT5G55850 123 / 8e-38 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.012G092601 [exp] 59 / 2e-11 AT2G04410 78 / 3e-20 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.015G089201 [exp] 58 / 2e-11 AT2G04410 90 / 1e-25 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.001G368900 [exp] 55 / 2e-10 AT5G55850 124 / 4e-39 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.001G338500 [exp] 54 / 3e-10 AT5G40645 82 / 1e-22 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.014G168900 [exp] 53 / 1e-09 AT2G04410 102 / 1e-30 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.002G245400 [exp] 51 / 6e-08 AT3G25070 169 / 3e-52 RPM1 interacting protein 4 (.1) Potri.011G022000 [exp] 41 / 0.0001 AT3G25070 74 / 6e-16 RPM1 interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05627 [flax] [poplar] AvrRpt-cleavage Cleavage site for pathogenic type III effector avirulence factor Avr
Representative CDS sequence Show only first row Show all	>Lus10040889 pacid=23157737 polypeptide=Lus10040889 locus=Lus10040889.g ID=Lus10040889.BGIv1.0 annot-version=v1.0 ATGCAGGCGGCGGCGGGGGGAGGAGGGGTAGCGTTGCCGAAATTCGGGGATTGGGATGTGGACAACCCATCCGACTCTGCTCAAGGATATACCGTTATTT TCAATAAGGCAAGAGACGACAAGAAGACCACCAAAGCAAACCCAGCAGCTGAAGCTGATTCCCAATTACAACCAGCAGCAGCACCTATTGATCATAATAA TAATAATAACAGTAATGATTACGATTCTCCAACTTTCAACAAAAATGAACCTTACCATCCTCCCCAGTCCTCTCGCAAGGGAGATGAGCCTTCGATTGAA CCTGAGATTATCGATGGAATTGTGAAAGCACTGCAGGGATCCCCAGATGCAGTGATTAGCACTGCAGTAACAGCCTTGAAACCTGAAGATGCATTTGATC CTAATCGTCTTCAACCTACTCCTCTACAACTAGAAGAGGATTTGGAACAGCTTAAGGTCCTTGAGAATGGCTATAAAATGAAGGTAATAAAAGTTGACCA TGAAGCTCACGGTATTGATGCCCCAGAAGATGTTGGCAAGATTGAAGCTCTGATGCGTGAGCAAAACTTACCCTAG
AA sequence Show only first row Show all	>Lus10040889 pacid=23157737 polypeptide=Lus10040889 locus=Lus10040889.g ID=Lus10040889.BGIv1.0 annot-version=v1.0 MQAAAGGGGVALPKFGDWDVDNPSDSAQGYTVIFNKARDDKKTTKANPAAEADSQLQPAAAPIDHNNNNNSNDYDSPTFNKNEPYHPPQSSRKGDEPSIE PEIIDGIVKALQGSPDAVISTAVTALKPEDAFDPNRLQPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGIDAPEDVGKIEALMREQNLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	0	1
					Lus10040407 [exp]	4.2	0.9803
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	4.7	0.8340
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	4.9	0.8218
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	5.2	0.7791
					Lus10024501 [exp]	5.3	0.7686
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	5.6	0.7573
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	6.0	0.9803
					Lus10027667 [exp]	7.3	0.9803
					Lus10015682 [exp]	8.5	0.9803
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	9.5	0.7672

Compare expression of checked genes

Lus10040889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.