Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36850 1127 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT3G07160 955 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT1G06490 796 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT1G05570 778 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 772 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT4G04970 766 / 0 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) AT3G59100 760 / 0 ATGSL11 glucan synthase-like 11 (.1) AT5G13000 754 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT4G03550 754 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT2G13680 754 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014796 [exp] 1359 / 0 AT2G36850 2935 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10032463 [exp] 969 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1) Lus10042959 [exp] 947 / 0 AT3G07160 2760 / 0.0 glucan synthase-like 10 (.1) Lus10033483 [exp] 779 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10007327 [exp] 778 / 0 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10020893 [exp] 776 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10001424 [exp] 775 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001056 [exp] 774 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10003920 [exp] 769 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011900 [exp] 1506 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.015G089300 [exp] 1210 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.011G052400 [exp] 1018 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.005G058300 [exp] 793 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G230000 [exp] 780 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.002G058700 [exp] 772 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 763 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.013G131300 [exp] 758 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.003G214200 [exp] 750 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 747 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10040891 pacid=23157582 polypeptide=Lus10040891 locus=Lus10040891.g ID=Lus10040891.BGIv1.0 annot-version=v1.0 ATGGACATTCACATTTGGTACACACTCCTATCAGCAGTTATTGGGGGAATAATGGGAGCAAGAGATCGTTTAGGGGAGATACGCACACTTGACATGGTCC ATAAACGATTTGAGAGCTTCCCAGCTGCGTTTGTGAAGAATCTGGTCTCTCCCCATGTGACGAGGTTGCCATTCAATGCACAAGCTTCTCAGGAATCTCA GGACTCGAACAAAGCATATGCTGCGTTGTTTTCTCCCTTTTGGAATGAAATAATCAAATGTTTGCGAGAGGAAGATTTCATTAGCAACCGAGAAATGGAC TTGCTTTCCGTTCCTAGCAATAAAGGGAGTTTGAGATTAGTTCAATGGCCATTGTTTCTTCTCAGCAGTAAGATATTGCTGGCGGTTGATTTGGCGTTGG ACTGCAAAGACACACAAAGAGATCTGTGGAATAGAGTATGTAAAGACGAGTATATGGCTTATGCAGTTCAGGAATGCTACTATAGTGTTGAGAAAATCTT ACATTCCCTGGTTGATGGTGAAGGAAGACTCTGGGTTGAAACGATCTTTCGTGAGATCAACAACAGTATATTGGAGGAATCACTAGTCATAACGGTGTCA CTTAAAAAGCTTCCTCTCGTATTGTCGAGATTTACTGCACTCACCGGTCTTCTGATACGTAATGAGACTCCCGGTCTTGCTAAAGGTGCTGCAAACGCTG TGTATCAGCTATATGAGGTTGTTACTCATGACTTGCTGTCATCTGATCTGAGAGAGCGATTCGATACATGGAACATCTTAGCTAGGGCAAGAAATGAAGG ACGCTTGTTTTCTAGGATTGAATGGCCAAGAGATCCAGAGATCAAGGAGCAGGTGAAGCGACTACACCTTCTTCTTACTGTCAAGGATTCTGCAGCAAAC ATTCCGAAGAATCTTGAGGCAAGAAGAAGATTAGAGTTCTTCTCAAATTCACTATTCATGGATATGCCTGCTCCTAAGCCAGTTTCTGAAATGATGCCCT TCTGTGTCTTCACACCATACTACAGTGAGACTGTACTTTATAGCCTGTCTGAATTGCGGGTAGAAAATGAGGATGGGATATCAACTCTCTTTTATCTACA GAAGATCTTTCCAGATGAGTGGGAGAACTTCTTGGAACGGATTGGTAGAGGAGAGTCCACTGGCGATGCTGATCTCCAAGAAAATTCTAGTGATTCTCTG GAACTTCGGTTTTGGGCATCTTATCGTGGCCAGACTCTAGCTAGGACGGTACGTGGTATGATGTACTATAGAAGGGCTTTGATGTTGCAGAGCTATCTGG AGAGCAGATCATTGGGAGTGGATGATTATTCTCAGACTGGTGCAACAACTGAAGGATTTGGCTTATCACGCGAATCTCGTGCTCAAGCTGATTTGAAGTT TACTTATGTTGTATCATGTCAAATATATGGCCAACAGAAGCAGCGGAAGGCACCAGAGGCTACTGATATTGCTCTCTTGTTACAAAGGAATGAGGCACTT CGTGTTGCATTCATCCATGTGGATGAGACTGGTTCTACAGATGGGAAAGTTACGAAGGTATACCACTCCAAGCTTGTGAAAGCTGATGCTCATGGAAAAG ATCAGGAAGTGTATTCAATCAAACTTCCTGGTGATCCAAAGCTTGGAGAAGGGAAACCTGAAAATCAGAATCATGCCATAGTTTTCACTCGCGGAGAAGC CATTCAGGCCATTGACATGAATCAGGACAACTACTTTGAAGAAGCACTGAAAATGAGAAACCTCCTCGAAGAATTTCGAGCCAACCATGGCATCCGGCAT CCTTCCATTCTCGGTGTGAGGGAGCACGTCTTTACTGGCAGTGTCTCTTCTTTGGCGTGGTTTATGTCTAATCAAGAGACAAGCTTTGTAACATTGGGTC AAAGGGTCTTGGCAAAACCACTAAAAGTTCGTATGCACTATGGCCATCCAGATGTTTTCGATCGAATATTTCATATAACTCGAGGTGGTGTTAGTAAGGC GTCACGTGACAACTACTTTGAAGAAGCACTGAAAATGAGAAACCTCCTCGAAGAATTTCGAGCCAACCATGGCATCCGGCATCCTACCATTCTCGGTGTG AGGGAGCACGTCTTTACTGGCAGTGTCTCTTCTTTGGCGTGGTTTATGTCTAATCAAGAGACAAGCTTTGTAACATTGGGTCAAAGGGTCTTGGCAAAAC CACTAAAAGTTCGTATGCACTATGGCCATCCAGATGTTTTCGATCGAATATTTCATATAACTCGAGGTGGTGTTAGTAAGGCGTCACGTGTTATTAACAT TAGTGAAGATATATATGCAGGGTTTAATTCCACATTAAGACAAGGAAATGTTACACACCACGAATACATTCAGGTTGGGAAGGGAAGAGATGTTGGTTTA AACCAGATTGCCCTGTTTGAAGGCAAAGTCGCTGGAGGAAATGGGGAGCAAGTACTGAGTAGGGATGTTTACAGGCTTGGACAACTATTTGATTTCTTCC GGATGCTGTCCTTCTACATCTCATCTGTTGGGTTTTATGTTTGTACAATGATGACCGTTCTAACTATATACATTTTCTTGTACGGAAGAACCTACCTGGC TTTCTCAGGGGTAGACCGAGCTGTTGCACGGGAGGCAAGGATTCTTGGAAACACAGCTCTGGATGCTGTGCTTAATACCCAGTTCCTGGTCCAGATTGGA GTTTTTACTGCTGTGCCTATGATAATGGGCTTCATCCTTGAATTGGGGTTGTTACAGGCTGTTTTTAGCTTTATCACCATGCAACTGCAATTGTGTTCGG TCTTCTTCACATTTTCGTTGGGAACAAGAACCCATTATTTTGGTCGGACAATTCTACATGGAGGTGCAAAGTACCGAGCAACTGGTAGAGGTTTTGTTGT CCGGCATATCAAGTTTGCTGAAAATTACAGGCTGTACTCAAGAAGCCATTTTGTGAAAGCGCTTGAAGTTGCACTGCTTCTTATAGTCTACATCGCATAT GGATTCACGAGGGGGGGTGCAGTATCTTTTATTTTACTTACACTGAGCAGCTGGTTCCTTGTCATATCTTGGCTTTTTGCTCCTTACATATTCAATCCAT CTGGTTTTGAATGGCAAAAGACTGTTGAAGATTTTGACGATTGGACCACTTGGCTTATGTATAAAGGAGGAATTGGTGTGAAGGGAGATCAGAGTTGGGA ATCGTGGTGGGATGAAGAGCAGGCGCACATTCAAACTTTAAGAGGTCGCATATTGGAGACAATTTTAAGCTTGAGATTCTTCTTGTTTCAATATGGCATT GTATATAAACTCCAGCTCACTGGGAAGGACACATCTCTTGCGATTTACGGTTTTTCCTGGGCGGTATTGGTTGGGATCGTCTTGGTCTTCAAGGTCTTTA CTTATAGCCCAAAGCGATCCATCAACTTCCAGCTACTGATGAGATTCACGCAAGGGGTGACGTCGATGGGGCTAATAGCAGCCCTGTGCCTTGTCGTCGC CTTCACAAATCTGTCGATTACAGATTTGTTTGCAAGCATCCTTGCATTCATTCCAACTGGATGGGCGATACTATGCCTTGCTGTCACGTGGAAAAGAATA GTGAGGAGCTTAGGGTTGTGGGAGTCGGTTCGTGAATTTGCGAGAATGTATGATGCTGGGATGGGTATGGTTATATTTGCTCCAATAGCATTCCTATCCT GGTTTCCTTTCGTTTCAACCTTCCAGTCACGCCTTCTCTTCAATCAAGCATTCAGCCGGGGTCTTGAAATCTCGCTTATCCTTGCTGGGAACAAGGCTAA CGTGGATATGTGA
AA sequence Show only first row Show all	>Lus10040891 pacid=23157582 polypeptide=Lus10040891 locus=Lus10040891.g ID=Lus10040891.BGIv1.0 annot-version=v1.0 MDIHIWYTLLSAVIGGIMGARDRLGEIRTLDMVHKRFESFPAAFVKNLVSPHVTRLPFNAQASQESQDSNKAYAALFSPFWNEIIKCLREEDFISNREMD LLSVPSNKGSLRLVQWPLFLLSSKILLAVDLALDCKDTQRDLWNRVCKDEYMAYAVQECYYSVEKILHSLVDGEGRLWVETIFREINNSILEESLVITVS LKKLPLVLSRFTALTGLLIRNETPGLAKGAANAVYQLYEVVTHDLLSSDLRERFDTWNILARARNEGRLFSRIEWPRDPEIKEQVKRLHLLLTVKDSAAN IPKNLEARRRLEFFSNSLFMDMPAPKPVSEMMPFCVFTPYYSETVLYSLSELRVENEDGISTLFYLQKIFPDEWENFLERIGRGESTGDADLQENSSDSL ELRFWASYRGQTLARTVRGMMYYRRALMLQSYLESRSLGVDDYSQTGATTEGFGLSRESRAQADLKFTYVVSCQIYGQQKQRKAPEATDIALLLQRNEAL RVAFIHVDETGSTDGKVTKVYHSKLVKADAHGKDQEVYSIKLPGDPKLGEGKPENQNHAIVFTRGEAIQAIDMNQDNYFEEALKMRNLLEEFRANHGIRH PSILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLAKPLKVRMHYGHPDVFDRIFHITRGGVSKASRDNYFEEALKMRNLLEEFRANHGIRHPTILGV REHVFTGSVSSLAWFMSNQETSFVTLGQRVLAKPLKVRMHYGHPDVFDRIFHITRGGVSKASRVINISEDIYAGFNSTLRQGNVTHHEYIQVGKGRDVGL NQIALFEGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFYISSVGFYVCTMMTVLTIYIFLYGRTYLAFSGVDRAVAREARILGNTALDAVLNTQFLVQIG VFTAVPMIMGFILELGLLQAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAY GFTRGGAVSFILLTLSSWFLVISWLFAPYIFNPSGFEWQKTVEDFDDWTTWLMYKGGIGVKGDQSWESWWDEEQAHIQTLRGRILETILSLRFFLFQYGI VYKLQLTGKDTSLAIYGFSWAVLVGIVLVFKVFTYSPKRSINFQLLMRFTQGVTSMGLIAALCLVVAFTNLSITDLFASILAFIPTGWAILCLAVTWKRI VRSLGLWESVREFARMYDAGMGMVIFAPIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKANVDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	2.0	0.9022
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	2.4	0.9034
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	2.4	0.9113
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	3.6	0.8938
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	4.9	0.8987
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	5.3	0.9069
AT5G58100			unknown protein		Lus10027581 [exp]	6.6	0.8964
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	6.7	0.8922
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	7.3	0.8857
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	7.7	0.8969

Compare expression of checked genes

Lus10040891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.