Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36850 997 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT3G07160 682 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT2G31960 344 / 9e-103 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT5G13000 338 / 7e-101 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G13680 328 / 3e-97 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT1G05570 327 / 5e-97 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G14570 307 / 3e-90 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G59100 303 / 1e-88 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 293 / 2e-85 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT4G03550 280 / 1e-80 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014796 [exp] 1175 / 0 AT2G36850 2935 / 0.0 CHORUS, glucan synthase-like 8 (.1) Lus10032463 [exp] 728 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1) Lus10042959 [exp] 651 / 0 AT3G07160 2760 / 0.0 glucan synthase-like 10 (.1) Lus10003920 [exp] 330 / 5e-98 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10020751 [exp] 307 / 3e-95 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1) Lus10002097 [exp] 318 / 4e-95 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10037469 [exp] 322 / 6e-95 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 317 / 3e-93 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10042478 [exp] 315 / 8e-93 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089300 [exp] 1088 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 730 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.015G089500 [exp] 374 / 8e-127 AT2G36850 337 / 1e-106 CHORUS, glucan synthase-like 8 (.1) Potri.001G012200 [exp] 340 / 2e-101 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 338 / 1e-100 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 331 / 3e-98 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G230000 [exp] 326 / 1e-96 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.002G058700 [exp] 303 / 2e-88 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 302 / 2e-88 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 285 / 1e-82 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040892 pacid=23157937 polypeptide=Lus10040892 locus=Lus10040892.g ID=Lus10040892.BGIv1.0 annot-version=v1.0 ATGCCTAGGGTTTACGATAACTGGGATAGGCTGGTGCGAGCTACCTTGAAGCAGGAGCAGCTGAGGAGTGCCGGTCAAGGTCCTGAGAGAACTGGCAGTG GCATCGCCGGCGCTGTTCCGCCTTCGCTTGTCCACAGTACAAACATTGACGCCATATTGCAGGCCGCAGATGAGATTCAAGCTGATGACCCTAATGTTGC CAGGATCTTGTGTGAACAAGCATATACTATGGCACAGAATTTAGACCCCAATAGTGGTGGCCGCGGTGTTCTCCAGTTCAAGACTGGGTTGATGTCTGTG ATCAAGCAAAAGCTTGCTAAAAGAGATGGCACACCAATAGATCGTAATCGTGACATCGAGCATCTGTGGGAGTTTTACCAACGTTACAAGAAACGACATA GAGTGGATGACATCCAGAGAGAGGAACAGAAGTGGCGTGAATCTGGAACATTTACTACAGCTAACCTGGGAGATTTGGAATTGCGTTCTCTAGACATGAA AAAGGTATTCTCAACTTTGAGGGCCCTGATAGAAGTCATGGAATCTCTTTCCAAGGATGCTGATCCTCATGGTGTCGGAAAGCTTATTATGGAGGAGCTA CGGAGAATTAAAAAGGCTGGGGAACTCACACCATACAACATTGTACCTCTAGACGCCCCATCCTTGGCCAATGCTATCGGAGTTTTCCCTGAAGTGAGAG GTACAATATCTGCTATCAGATACACTGAACAGTTCCCTAGGCTTCCTGCTGTTCTTGAGATTTCTGGAGAACGGAATGCAGACATGTTCGATCTCCTGGA ATATGTGTTTGGTTTTCAGAATGGCAACGTGAGGAACCAGCGGGAAAATGTTGTTCTCATGATTGCAAATGCACAGTCCCGACTCGGGATACCTACCCAG GCTGATCCTAAAATAGATGAAAAGGCAATCAATGAGGTTTTCTTGAAGGTGCTGGATAACTATATTAAGTGGTGCAAGTACCTGCGGATACGCCTTGCCT GGAACAGTAATCAAGCAGTTAATAAAGAAAGGAAACTCTTTCTCGTTTCATTATACTTCCTCATATGGGGTGAAGCTGCAAATGTTCGATTCCTACCGGA ATGCATTTGTTATATATTTCACCATATGGCAAAAGAGCTTGATGCTGTTCTCGATCATGGAGAAGCTGATCGTGCACCTAGCTGCAAAGATGAAAGCGGT TCTGTGTCCTTCCTTGACCAAGTGATTTTGCCTATCTATCATACACTAGCAGCAGAGGTTGAAAGAAATAATAATGGAAAAGCTGCACATTCTGCATGGA GAAACTATGATGATTTCAACGAGTACTTCTGGTCTCCTGCCTGTTTTGAGTTGAAATGGCCCATGAAAGAAGATTCATCGTTTTTGTTGAAGCCCAAAAA GTGGAAACGGACTGGAAAAAGCACTTTTGTTGAGCATCGTACGTTTCTTCACTTGTATCGAAGCTTCCACCGACTCTGGATTTTCTTGGCCCTGATGTTC CAGGCATTGACAATAATAGCCTTTCATCATGGGAAAATCAATTTGGAAACATTTAAAGTCATCTTGAGTGTTGGCCCATCATTTGCCATAATGAACTTCA TCAAGAGCTGTCTGGATGTGTTGCTTATGTTTGGGGCTTACACGACAGCAAGAGCCATGGCAATTTCCAGGCTGGTTATTAGGTTTTTCTGGGGTGGTTT GACCTCTGTGGCCATAACGTATCTTTATGTGAAGGTTCTACAGGAGAAAAATAACCAGGGATCTAATTCTTTCTACTTTCGCATATATATACTGGTGTTG GGCGTTTATGCAGCTCTGCGCTTGGTCTTTGCACTGCTACTAAAATTTCCAATCTGTCATACTTTGTCAGATATTTCTGATCAATCATTCTTCCAATTTT TCAAGTGGATTTATGAGGAGAGATACTATGTTGGACGTGGACTTTATGAGAGGTTGAGTGATTACTGCAGGTGA
AA sequence Show only first row Show all	>Lus10040892 pacid=23157937 polypeptide=Lus10040892 locus=Lus10040892.g ID=Lus10040892.BGIv1.0 annot-version=v1.0 MPRVYDNWDRLVRATLKQEQLRSAGQGPERTGSGIAGAVPPSLVHSTNIDAILQAADEIQADDPNVARILCEQAYTMAQNLDPNSGGRGVLQFKTGLMSV IKQKLAKRDGTPIDRNRDIEHLWEFYQRYKKRHRVDDIQREEQKWRESGTFTTANLGDLELRSLDMKKVFSTLRALIEVMESLSKDADPHGVGKLIMEEL RRIKKAGELTPYNIVPLDAPSLANAIGVFPEVRGTISAIRYTEQFPRLPAVLEISGERNADMFDLLEYVFGFQNGNVRNQRENVVLMIANAQSRLGIPTQ ADPKIDEKAINEVFLKVLDNYIKWCKYLRIRLAWNSNQAVNKERKLFLVSLYFLIWGEAANVRFLPECICYIFHHMAKELDAVLDHGEADRAPSCKDESG SVSFLDQVILPIYHTLAAEVERNNNGKAAHSAWRNYDDFNEYFWSPACFELKWPMKEDSSFLLKPKKWKRTGKSTFVEHRTFLHLYRSFHRLWIFLALMF QALTIIAFHHGKINLETFKVILSVGPSFAIMNFIKSCLDVLLMFGAYTTARAMAISRLVIRFFWGGLTSVAITYLYVKVLQEKNNQGSNSFYFRIYILVL GVYAALRLVFALLLKFPICHTLSDISDQSFFQFFKWIYEERYYVGRGLYERLSDYCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	0	1
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	1.4	0.9862
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	2.0	0.9788
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	2.4	0.9833
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	3.0	0.9790
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	4.5	0.9724
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034563 [exp]	5.3	0.9625
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	5.5	0.9777
AT4G39420			unknown protein		Lus10006814 [exp]	6.0	0.9761
AT1G16800			P-loop containing nucleoside t...		Lus10037304 [exp]	6.2	0.9712
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	6.3	0.9729

Compare expression of checked genes

Lus10040892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.