Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50310 757 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 88 / 9e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 79 / 6e-15 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 77 / 2e-14 ACBP5 acyl-CoA binding protein 5 (.1) AT1G18610 76 / 4e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G33070 73 / 3e-13 NSP2, ATNSP2 NITRILE-SPECIFIER PROTEIN 2, nitrile specifier protein 2 (.1.2.3) AT4G04670 67 / 4e-11 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 64 / 1e-10 NSP5 nitrile specifier protein 5 (.1) AT1G74150 64 / 3e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 62 / 6e-10 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034163 [exp] 83 / 3e-16 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 83 / 4e-16 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10017860 [exp] 77 / 1e-14 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029902 [exp] 76 / 6e-14 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 75 / 1e-13 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031420 [exp] 74 / 2e-13 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031497 [exp] 72 / 7e-13 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10010913 [exp] 69 / 7e-12 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002756 [exp] 69 / 1e-11 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090100 [exp] 823 / 0 AT5G50310 827 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G214900 [exp] 89 / 3e-18 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G008200 [exp] 88 / 6e-18 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G022000 [exp] 88 / 9e-18 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 82 / 6e-16 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 76 / 3e-14 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G026900 [exp] 72 / 6e-13 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 69 / 7e-12 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.015G059400 [exp] 67 / 3e-11 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 61 / 2e-09 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10040895 pacid=23157908 polypeptide=Lus10040895 locus=Lus10040895.g ID=Lus10040895.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAACTAAAAAGCCTGGAAAAGGAAAAGAGAAGACGGAGAAGAAAACTCTCAAAGCCGAGGAGAAGAAGGCTCGCAGAGAGGCCAAGAAGC TCTCCCCTGAAGACGACATTGACGCCATTTTATTAAGCATACAGAAAGAGGAAGCAAAGAAGAAGGAAGTCCAGGTTGACGATAATGTCCCTGCACCCTC TCCTCGATCCAACTGTACGCTGAGCATTAATCCGTTAAAAGAGACCGAGTTGATCCTCTATGGAGGTGAATTCTACAATGGCAGCAAGACATTTGTTTAT GGCGATTTATACCGTTACGATGTGGAGAAGCAAGAGTGGAAATCGATATCAAGCCCCAATAGTCCACCTCCACGAAGTGCTCATCAAGCAATTGCTTGGA AGAATTATCTATACATCTTTGGTGGTGAGTTCACATCTCCAAATCAAGAGCGCTTCCATCACTATAAGGATTTCTGGGTGTTTGACCTCAAAACAAATCA GTGGGAGCAGCTTAATTATAAAGGCACCCCAAGTCCTCGTTCAGGTCATCGGATGGTCTTATACAAGCACAAAATAATTCTTTTTGGTGGCTTCTATGAC ACTCTCAGAGAAGTAAGGTATTACAATGACTTGCATATCTTTGACCTCGATCAGTTCAAGTGGCTAGAAATTAAGCCAAAGCTTGGAGCGTTGTGGCCTA GTGCACGGAGTGGTTTTCAGTTCTTTGTTTATCAAGATGAGATATTTTTGTATGGTGGCTACTCTAAGGAGGTTACCTCCGACAAGGGTAACACAGAGAA AGGAAATGTCCACGCAGACATGTGGTCCCTTGATCCAAGAACGTGGGAATGGAACAAGGTAAAGAAGAGTGGGATGCCTCCTGGGCCTCGTGCTGGCTTT TCTATATGTGTGCACAAGAAGCGTGCTGTGATGTTTGGGGGAGTGGTGGATATGGAAATGGAAGGTGATGTACTGATGAGCTTATTTCTAAATGAACTCT ATGGCTTCCAGTTAGACAACCATCGATGGTATCCATTGGAGTTGCGGAAGGAAAAGTCCACAAAAGATAAGTTAAAAAAAAGTTCAGAAAGTCAAACACG TACTAGTATAAATGAAGCAGAAGACTGTTCCAATATGGAAATTGATGAGACCATGGAGGACCTTGATGAAGCCAAAGTTGATCTGATCTCTGAGAATATG GATACAAACTTGAATGTAGCAGATGCTGGCTCTTCAAGCACTAAAGTTGGAGTAAAGGTTGAGGCTTCTAAGGCCAAGATGGTGCAAAGCTCAGCTTTCC CTGAGATAGTGAAGCCCTGTGGACGTATAAACTCTTCTGTGGTCGTCAGTAGAGATACGTTATACATGTACGGTGGAATGATGGAAGTCAAAGATCAGGA AATAACACTTGACGATTTGTATTCACTCAATCTCAGCAAACTTGACGAATGGAAATGCCTCATCCCGGCATCTGAATCTGAATGGGTAGAAGTCTCTGAG GATGATGATGATGAAGAAGATGAAGATGCAAGCAATGATGAGGATAGTAATGACAGCGATATGGATGACTCTGACGAAGATGAGGATGAGGATGACACAG AGGCTGTGAATGATGCTTCCGGATCACTTCAAGTGGGAGATGCAGTTGCTATAATAAAGGGTGAGAAAAAGAAGCTTCGGAGGAAGGAGAAACGAGCAAG GATAGAACAAATCAGAGCTAGCCTTGGCCTTTCAGATTCACAAAGAACACCAATACCTGGAGAATCTTTGAGGGATTTTTATAAGCGTACGAATATGTAC TGGCAAATGGCAGCACACGAACATACACAGCACACTGGGAAGGAGCTTCGTAAAGATGGTTTCGATCTTGCTGAAGGGCGTTACAGGGAGCTTAAACCAA TTCTTGATGAGTTGGCCATATTGGAGGAGGAGCAAAAGGCTGAAGAACAAGAAGAGGTGGAAACAACTAGTGGTAAAAAGAGGGGCAAGAAGAAAAAATA A
AA sequence Show only first row Show all	>Lus10040895 pacid=23157908 polypeptide=Lus10040895 locus=Lus10040895.g ID=Lus10040895.BGIv1.0 annot-version=v1.0 MGKKTKKPGKGKEKTEKKTLKAEEKKARREAKKLSPEDDIDAILLSIQKEEAKKKEVQVDDNVPAPSPRSNCTLSINPLKETELILYGGEFYNGSKTFVY GDLYRYDVEKQEWKSISSPNSPPPRSAHQAIAWKNYLYIFGGEFTSPNQERFHHYKDFWVFDLKTNQWEQLNYKGTPSPRSGHRMVLYKHKIILFGGFYD TLREVRYYNDLHIFDLDQFKWLEIKPKLGALWPSARSGFQFFVYQDEIFLYGGYSKEVTSDKGNTEKGNVHADMWSLDPRTWEWNKVKKSGMPPGPRAGF SICVHKKRAVMFGGVVDMEMEGDVLMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSESQTRTSINEAEDCSNMEIDETMEDLDEAKVDLISENM DTNLNVADAGSSSTKVGVKVEASKAKMVQSSAFPEIVKPCGRINSSVVVSRDTLYMYGGMMEVKDQEITLDDLYSLNLSKLDEWKCLIPASESEWVEVSE DDDDEEDEDASNDEDSNDSDMDDSDEDEDEDDTEAVNDASGSLQVGDAVAIIKGEKKKLRRKEKRARIEQIRASLGLSDSQRTPIPGESLRDFYKRTNMY WQMAAHEHTQHTGKELRKDGFDLAEGRYRELKPILDELAILEEEQKAEEQEEVETTSGKKRGKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	6.9	0.8374
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	6.9	0.8143
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	7.4	0.8169
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	9.9	0.8421
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	12.6	0.7982
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	13.6	0.8109
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	15.7	0.8279
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	17.5	0.7674
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	18.3	0.8388
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	20.9	0.7842

Compare expression of checked genes

Lus10040895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.