Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13070 297 / 3e-99 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 182 / 4e-54 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 145 / 2e-39 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 120 / 2e-30 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G18390 77 / 3e-15 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 69 / 1e-12 ATCFM3A CRM family member 3A (.1) AT3G01370 69 / 2e-12 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G14510 66 / 2e-11 ATCFM3B CRM family member 3B (.1) AT4G29750 64 / 7e-11 CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G16180 59 / 2e-09 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034313 [exp] 192 / 1e-57 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10041459 [exp] 192 / 2e-57 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009566 [exp] 149 / 6e-41 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 147 / 2e-40 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10022280 [exp] 108 / 1e-25 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10003667 [exp] 107 / 3e-25 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009031 [exp] 71 / 3e-13 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 71 / 4e-13 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10001187 [exp] 71 / 7e-13 AT3G23070 879 / 0.0 CRM family member 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083000 [exp] 321 / 1e-108 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 172 / 5e-50 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 148 / 2e-40 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.001G343700 [exp] 117 / 7e-29 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G350801 [exp] 83 / 5e-17 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 71 / 3e-13 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 69 / 1e-12 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.006G148901 [exp] 62 / 1e-10 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 62 / 4e-10 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10040896 pacid=23157657 polypeptide=Lus10040896 locus=Lus10040896.g ID=Lus10040896.BGIv1.0 annot-version=v1.0 ATGGTCGCCCCAGCTTTCATTTTCCAGAGAAGTCTTAACCGAATTTTCTCCGCTAATCTCCGCAGGGCACCTTCGGTCTGCTTGGGCTTTCGACATCAGG GTTTCTCTTCCTTTCCCAGTCTCGGTTCTGCTTCAAGGCCTTCCATCTTTACTACCTCAGCATTTTCAAGAGGCTGTGGAATTCCAAGGTCTTTTCTTCC TGTTCCATGTGCATGTTTTCCTCATTTCACATATTTGCGGAGGATCAACAAGTTCTCTAGTCCTGTTTTATGCAGAAAATTCACCAATACGACGAGATGC ATGAGCTGCCGTTCTGTTCAACTGAAGATGTACGGTGATGTAATTAAGTTTGCTGATGATAAACAATGGAAAGAAGGCAGTTCACCCAAGGGAGAGAGGA AATCAAACAAGTATAAAATGTCTAAGAGGGCTAAAGTGAATGAACTCAGATTCTTTCGGCTCAAGGCAAAAAAGAAGATAAATTCGCCAAACCCAGAAGT GAGGATCAGATATAAGCTTGAAAAGGCCAAAAGGAAGGAGGCATGGTTGATCGAGAAGCTGATGAAATTTGAGCTTGCCAAGGGTCAACCCGAAACCTAT GATCCTGAAATATTAACAGAGGAAGAGAAGCATTACCTGAAGCGCACTGGTGAGAAAAAGAAAAACTTTGTTATAGTTGGGAGGCGAGGCGTTTTTGGAG GTGTTGTTCTCAATATGCATCTCCACTGGAAGAAACATGAGACGGTGAAGGTTATTTGTAAACCCTGCCGTCCGGGACAAATTCATGAATATGCCAATGA GCTTTCTCGACTGAGTAAAGGAATCGTGATCGATATAAAGCCAAATGATTCCATCATATTCTACAGGGGCAAGAACTATGTGCAGCCTGAGGTTCTATCC CCTCCAGATACCTTATCAAAAGCGAAGGCTTTAGAAAAATGCAAGTTCCAGCAATCACTTGACCATACGAGTCAGTTCATCGAGAAGCTGGAGAAAGAGC TTGAGGAGTATCTGGAGCATGTCGTGCGTTACAAGAGAGTCAAGGATGAAGTGCAGGATGCCTGA
AA sequence Show only first row Show all	>Lus10040896 pacid=23157657 polypeptide=Lus10040896 locus=Lus10040896.g ID=Lus10040896.BGIv1.0 annot-version=v1.0 MVAPAFIFQRSLNRIFSANLRRAPSVCLGFRHQGFSSFPSLGSASRPSIFTTSAFSRGCGIPRSFLPVPCACFPHFTYLRRINKFSSPVLCRKFTNTTRC MSCRSVQLKMYGDVIKFADDKQWKEGSSPKGERKSNKYKMSKRAKVNELRFFRLKAKKKINSPNPEVRIRYKLEKAKRKEAWLIEKLMKFELAKGQPETY DPEILTEEEKHYLKRTGEKKKNFVIVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQIHEYANELSRLSKGIVIDIKPNDSIIFYRGKNYVQPEVLS PPDTLSKAKALEKCKFQQSLDHTSQFIEKLEKELEEYLEHVVRYKRVKDEVQDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13070			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040896 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	12.5	0.6755
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	17.0	0.6428
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10006073 [exp]	48.0	0.6414
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	54.2	0.6317
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	60.4	0.5667
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	64.9	0.6141
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	70.2	0.5716
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	77.5	0.5889
AT2G24990			Serine/threonine-protein kinas...		Lus10017927 [exp]	85.8	0.5944
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	93.6	0.5886

Compare expression of checked genes

Lus10040896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.