Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62940 339 / 8e-117 Cysteine proteinases superfamily protein (.1.2.3) AT5G67170 75 / 5e-15 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 65 / 1e-11 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT2G38025 51 / 2e-07 Cysteine proteinases superfamily protein (.1) AT5G04250 44 / 0.0001 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005939 [exp] 532 / 0 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10005193 [exp] 71 / 2e-13 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 62 / 1e-10 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10013303 [exp] 62 / 2e-10 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10010459 [exp] 46 / 1e-05 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134100 [exp] 400 / 4e-141 AT3G62940 338 / 9e-116 Cysteine proteinases superfamily protein (.1.2.3) Potri.004G196800 [exp] 73 / 3e-14 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.009G160100 [exp] 71 / 1e-13 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 62 / 1e-10 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.016G110400 [exp] 50 / 6e-07 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.006G057400 [exp] 48 / 5e-06 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 46 / 1e-05 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 45 / 2e-05 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.016G019700 [exp] 40 / 0.0009 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10040897 pacid=23179643 polypeptide=Lus10040897 locus=Lus10040897.g ID=Lus10040897.BGIv1.0 annot-version=v1.0 ATGCTCGCCAGGCATAGGAAGGAGACAACAGCGCTGCAGAACAAAGAAATTGAACTGAAGAAGGGGGCTGCGAAAGGGAGCAAAACAGAACAGAAAGCCA AGAAGAAGCAAGTTGAAGAACAAATAACACGGCTTTCTACTGAGCTCAAAGAGAAGCAAGCACAAGAGCTTGCTTCATTAGGCTATGTCAATAACAATGA CAGCGAGAAAGGCAACCTAGACACGCTAGTGAAGGCCATAGCTGGGGTTTCTGTCAGCAGTCCCATTGCTGATAACAACACCAGGAGGAGCAAAGGTGGG AAAAGGAAAGATAAGAGAGCTCAGCAAGAAGCTGAGAGAGAGAAGAGGATCCAGGAAGAACAGAGCAACCTTGTGAGTGACAGAATGATTGAAGACGAGA AATTGGGGAGAAAGCTCGAGCCCCTTGGGTTGACTGTTAATGAGATCAAACCGGATGGTAATTGCCTCTACCGAGCTGTGGAAGACCAGTTAGCTCTCCT ATCTGGCGGTTCTTCTCCATATAGCTATCAAGATCTCCGGGAAATGGTGGCAGCGTATATGAGAAAGAACTCGTCGGAGTTCCTGCCGTTTTTCCTTTCC GAGACAGAAACTGCAGAAGAAGCAGACTCTGACAGTACTCTGGCGGAAAGATTCGAGAGTTACTGTAAGGAAATCGAATCGACAGCTGCGTGGGGTGGAC AGCTGGAGCTGGGTGCTTTGACTCACTGCTTGAGGAGGCCTATAATGATATATTCAGGATCGTTCCCTGATGTTGAGATGGGGAAGGAATACAAACCAGG TGGTGCTTCGTCGTCTACAGCAGCAAATATTATGCTGTCATATCATAAGCATGCCTTTGGGCTTGGGGAACATTACAACTCTGTAGTTCCCAGTTTGATT AGGTAG
AA sequence Show only first row Show all	>Lus10040897 pacid=23179643 polypeptide=Lus10040897 locus=Lus10040897.g ID=Lus10040897.BGIv1.0 annot-version=v1.0 MLARHRKETTALQNKEIELKKGAAKGSKTEQKAKKKQVEEQITRLSTELKEKQAQELASLGYVNNNDSEKGNLDTLVKAIAGVSVSSPIADNNTRRSKGG KRKDKRAQQEAEREKRIQEEQSNLVSDRMIEDEKLGRKLEPLGLTVNEIKPDGNCLYRAVEDQLALLSGGSSPYSYQDLREMVAAYMRKNSSEFLPFFLS ETETAEEADSDSTLAERFESYCKEIESTAAWGGQLELGALTHCLRRPIMIYSGSFPDVEMGKEYKPGGASSSTAANIMLSYHKHAFGLGEHYNSVVPSLI R

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	6.0	0.8701
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	12.5	0.8999
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	14.7	0.8610
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	15.4	0.8336
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	19.9	0.8630
AT2G34750			RNA polymerase I specific tran...		Lus10026162 [exp]	23.2	0.8191
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	36.2	0.8596
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	37.1	0.8631
AT1G64385			unknown protein		Lus10033958 [exp]	37.4	0.8527
AT5G60340			P-loop containing nucleoside t...		Lus10040792 [exp]	43.8	0.7983

Compare expression of checked genes

Lus10040897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.