Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47890 289 / 1e-95 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT3G07650 144 / 2e-39 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT1G28050 132 / 2e-34 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G33500 131 / 2e-34 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT5G48250 130 / 2e-34 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G21880 121 / 5e-31 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 114 / 1e-28 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT5G24930 97 / 4e-22 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 95 / 1e-21 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT2G24790 94 / 2e-21 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005936 [exp] 387 / 2e-136 AT2G47890 126 / 3e-35 B-box type zinc finger protein with CCT domain (.1.2) Lus10002578 [exp] 127 / 2e-32 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 125 / 2e-31 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 99 / 3e-23 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10026909 [exp] 97 / 2e-22 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10031584 [exp] 97 / 5e-22 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 95 / 3e-21 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10020105 [exp] 91 / 3e-20 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10035257 [exp] 86 / 3e-18 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208100 [exp] 390 / 3e-135 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 291 / 5e-97 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G061800 [exp] 129 / 4e-33 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 126 / 8e-32 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G323500 [exp] 120 / 3e-30 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 119 / 9e-30 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.006G267700 [exp] 101 / 7e-24 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.002G214500 [exp] 100 / 2e-23 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.018G013800 [exp] 99 / 4e-23 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.008G125200 [exp] 98 / 4e-22 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10040900 pacid=23179809 polypeptide=Lus10040900 locus=Lus10040900.g ID=Lus10040900.BGIv1.0 annot-version=v1.0 ATGTCGTCTGATAATACCCAGCCACCCATGAAATCCGAGGAGCAAGACGACGGCCAAAATAAGCTGCCACCGCCGCCGCCACGGCTATGCGATTACTGCA ACCAAAGCACCGCCGTATTGTACTGCAGAGCCGATTCCGCCAGGCTATGTCTCTCCTGCGATAGGGAAGTTCACTCAACCAACCAGCTCTTCACCAAGCA CACACGCTGGCTGCTCTGCGACGCTTGCGATGCTTCCCCTGCTTCCATCTTCTGCGAAAGCGAGCGCTCCGTTCTCTGCCAGAATTGCGATTGGGAGACC CACAACAACCTTTCCCTCTCTTCCTTGCACAATCGGAGGCCGATTGAAGGGTTTAGCGACTGCCCTTCTGCCGGCGAGCTGGTGGGATTTTTGGGGTTTG AAGATTTGGGGGTAATACTAACTAAAAAGGGTTTCAGGGAAGAAGATTCGTTGGTCGGGGCGGTTCCTGATGGGTCGGATCTGGGCGACGGGTACTCGGA TTTCCTCGTCTGGGACAGCTCCCCTGTTGGCAGCTTCGATGATTTGATTGTTTCTGGTGATTCGGGTCAGAATTTGAAGGCCATGGGAATTCCTCCTCTG CCCAAGAATCGAAATGCTGCTTGTGGACGGCACAAGGAGGAAATAATTCGTCAGCTTCGTCTAATGGCAAGACTGGAACCTGAGAATGGGAAAATTGATC CTCTCAGCTTGTTCGAATCAGTCCCTACTGAACAGAATATGGTTCCAGACAGCAATTGCTCGGGATCTGATCACAATTTGTTCCCTGCTTATGAGGAGCA TCTCTTTCACTGGCACAATGATGATGAAGATGCTGTTAATCAAGCTTTTATTTCTTCTATTCTGAGAACCAACTTGGACGAAGGTTCTGCAACACTCGAC AAGCAGTCTAAGACTGCTGATGATGAGGATGAAGCAAAGCCACAACATCCGGCTAGGACATTACCGACTTTTCCAAAAGTTGCAGCACATGAGATAAACA GCCAGGAGAGGGACTCTGCAATCTCAAGGTACAAGGAGAAGAAAAAAACAAGAAGGTATGACAAGCATATCAGGTACGAATCAAGAAAGGCTCGAGCAGA AAGCCGAACGAGAGTAAGAGGGCGTTTTGCTAAGATTCAACAGTAA
AA sequence Show only first row Show all	>Lus10040900 pacid=23179809 polypeptide=Lus10040900 locus=Lus10040900.g ID=Lus10040900.BGIv1.0 annot-version=v1.0 MSSDNTQPPMKSEEQDDGQNKLPPPPPRLCDYCNQSTAVLYCRADSARLCLSCDREVHSTNQLFTKHTRWLLCDACDASPASIFCESERSVLCQNCDWET HNNLSLSSLHNRRPIEGFSDCPSAGELVGFLGFEDLGVILTKKGFREEDSLVGAVPDGSDLGDGYSDFLVWDSSPVGSFDDLIVSGDSGQNLKAMGIPPL PKNRNAACGRHKEEIIRQLRLMARLEPENGKIDPLSLFESVPTEQNMVPDSNCSGSDHNLFPAYEEHLFHWHNDDEDAVNQAFISSILRTNLDEGSATLD KQSKTADDEDEAKPQHPARTLPTFPKVAAHEINSQERDSAISRYKEKKKTRRYDKHIRYESRKARAESRTRVRGRFAKIQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10040900 [exp]	0	1
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	1.0	0.8867
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	3.5	0.8405
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	3.5	0.8215
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	4.0	0.8136
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	8.8	0.7791
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	9.8	0.7660
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	15.7	0.7878
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	21.8	0.7647
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	23.3	0.7618
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040982 [exp]	25.3	0.7726

Compare expression of checked genes

Lus10040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.