Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 236 / 1e-76 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50800 231 / 1e-74 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G23660 230 / 1e-74 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 226 / 9e-73 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT4G25010 224 / 3e-72 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 221 / 2e-71 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT5G50790 218 / 1e-69 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT1G21460 157 / 1e-46 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT3G16690 146 / 2e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G53190 146 / 3e-42 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005935 [exp] 552 / 0 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 315 / 8e-108 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 311 / 4e-106 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10023249 [exp] 245 / 1e-80 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 243 / 9e-80 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10003143 [exp] 226 / 1e-72 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10015754 [exp] 224 / 4e-72 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 221 / 1e-70 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10016742 [exp] 213 / 2e-67 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060900 [exp] 239 / 7e-78 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 236 / 6e-77 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.003G166800 [exp] 235 / 3e-76 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 226 / 2e-73 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 222 / 2e-71 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 221 / 5e-71 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 220 / 1e-70 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 216 / 7e-69 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 159 / 9e-47 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 154 / 1e-45 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10040901 pacid=23180013 polypeptide=Lus10040901 locus=Lus10040901.g ID=Lus10040901.BGIv1.0 annot-version=v1.0 ATGGAACTCCAAGATCCTCAGTTGGCTTTTATTTTCGGCATCCTTGGCAACATCATGTCGTTTTGCGTATTTTTGGCCCCATTGCCAACGTTTAAGAGAA TAGTGAAGGAAAAGTCGACACAGGGATTCCAATCCTTACCGTATTCAGTGGCTCTGTTCAGTTCAACCTTGTACATCTACTACGCCTGCCTCAAGACAGA TGATGCCTTCTTGATCATCACCATCAACACCTTCGGCTGCCTCATCGAACTTGCCTACCTCATAGTTTACATCTTCTATGCTTCCTCTTCCGCCAGGGTG GAGACAGCAAAGCTGATGTTATGCTATAACACGGGTGTATTCGGAGGAATAGTGGGATTGACATCCTTGTTTTTCCATGATCACAACGTGAGAGTCAACG TGGTGGGATGGATCTGTGCCGTATTCTCCGTCTGTGTTTTTGCTGCGCCTCTCAACATCATCAGGGAGGTGATAAAGACAAGGAGCGTGGAGTTCATGCC CTTCACCCTATCTCTGTTCCTGACAGTGTGCGCCTTGTTCTGGTTTATTTACGGTCTTGCCCTCGGGGACTACTTCATTGCAAGTCCAAACATACTGGGA TTGGTGTTCGGGGTGACACAGATGGGGCTCTACTGGAAGTACTATAACAGGGGAACCACCAGCAACCAAGTGTTGCCTGTGGTGGATAGTAGCAGGAGCA GTACTCAGGAAACTGATGATGATGCGCAGCAGAAGATGATTTTGATAGACGACAAGGAGATGATGGTCATTAGTAACAGCTTGGTGGTTATTGCGAATAT TCAGCAGCAGGACGCAACTGATCATCATGAGGATAATGTGGACAGCGCCGCCGTCTCTATTGCCATGTCAAAATCAGAAGAAGACGAAGAAGAAGAGAGC GAGACGGATGAGGAACTACTCAACGTATAA
AA sequence Show only first row Show all	>Lus10040901 pacid=23180013 polypeptide=Lus10040901 locus=Lus10040901.g ID=Lus10040901.BGIv1.0 annot-version=v1.0 MELQDPQLAFIFGILGNIMSFCVFLAPLPTFKRIVKEKSTQGFQSLPYSVALFSSTLYIYYACLKTDDAFLIITINTFGCLIELAYLIVYIFYASSSARV ETAKLMLCYNTGVFGGIVGLTSLFFHDHNVRVNVVGWICAVFSVCVFAAPLNIIREVIKTRSVEFMPFTLSLFLTVCALFWFIYGLALGDYFIASPNILG LVFGVTQMGLYWKYYNRGTTSNQVLPVVDSSRSSTQETDDDAQQKMILIDDKEMMVISNSLVVIANIQQQDATDHHEDNVDSAAVSIAMSKSEEDEEEES ETDEELLNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10040901 [exp]	0	1
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	5.7	0.8156
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	9.6	0.7673
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	19.8	0.8127
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	29.1	0.8107
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	29.9	0.7800
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	31.3	0.7987
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	33.3	0.7872
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	34.0	0.7792
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	34.4	0.8024
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	42.2	0.7904

Compare expression of checked genes

Lus10040901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.