Plant FIBer expression Database

Lus10040902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03180 102 / 5e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005934
[exp]
244 / 4e-76 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G134700
[exp]
100 / 2e-26 AT4G03180 102 / 3e-27 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08524 rRNA_processing rRNA processing
Representative CDS sequence
>Lus10040902 pacid=23179625 polypeptide=Lus10040902 locus=Lus10040902.g ID=Lus10040902.BGIv1.0 annot-version=v1.0
ATGAAGAATCGGGAGCCAGCGAATGGAGATGGTGGCTCAAAATCATTCTCCCTCAAAAAGAAGAAGAATATGCAGAGGTTGGCAGGAAGAAGCGGCGGCG
GAGGCCTATCTCTTGAAACCTTCGCCAATATCAAATCCCCCACCAACAACTACAATCCTTCCATAATTAAAAAGAAGAGGGAATTTTATAAGAATGCCAA
ATATGTTAGCAAATTTAAGAAGCAGCTAAAGCAAGAGAATTACCAACCTCAACCTTCCTTAGCGTTCACAGAGGGCAGGGATGATGCAGGAGAAGGTAGC
AAGAGCATGAAAAGAAACAAGAAGAATGGTCCGCATGATGATGGTAATGAAGGTGGCGAGATTGCTAGAAGCAACAAGAAGAACAAGGGGAAGAATCCAT
ACAGCTTGAAAGAACTCTACGAGAAGCAGCGTGAAGAGGCTGAAAAGGCGAAAATGGCAAAAGAAGTAATCATCAAAGCAAAACAGGTAGAAAGAGCCAG
GGCTGAATCTAAAAGGAAAGCCACCAAGGAGGTAATGTTCAAGAAGACAAGACACGGCCAGCCCGTTATGAAGTACAGAATCGAGCATCTGTTGCAGAGC
CTTGATGCTGGAAGTTCCGTGTCCTGA
AA sequence
>Lus10040902 pacid=23179625 polypeptide=Lus10040902 locus=Lus10040902.g ID=Lus10040902.BGIv1.0 annot-version=v1.0
MKNREPANGDGGSKSFSLKKKKNMQRLAGRSGGGGLSLETFANIKSPTNNYNPSIIKKKREFYKNAKYVSKFKKQLKQENYQPQPSLAFTEGRDDAGEGS
KSMKRNKKNGPHDDGNEGGEIARSNKKNKGKNPYSLKELYEKQREEAEKAKMAKEVIIKAKQVERARAESKRKATKEVMFKKTRHGQPVMKYRIEHLLQS
LDAGSSVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03180 unknown protein Lus10040902
[exp]
0 1
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Lus10020397
[exp]
6.9 0.9220
AT1G27090 glycine-rich protein (.1) Lus10037224
[exp]
7.7 0.9326
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Lus10019147
[exp]
10.1 0.9230
AT3G15010 RNA-binding (RRM/RBD/RNP motif... Lus10023817
[exp]
11.5 0.9181
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Lus10018639
[exp]
11.5 0.9236
AT5G08550 ILP1 increased level of polyploidy1... Lus10001926
[exp]
14.7 0.9164
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10023565
[exp]
19.5 0.9186
AT3G01790 Ribosomal protein L13 family p... Lus10032063
[exp]
21.2 0.9117
AT2G27730 copper ion binding (.1) Lus10020624
[exp]
23.5 0.8968
AT1G32580 plastid developmental protein ... Lus10011789
[exp]
24.0 0.9027

Lus10040902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.