Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 684 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 681 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 596 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 518 / 3e-180 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 155 / 4e-41 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 132 / 7e-33 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT1G14660 58 / 1e-08 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2) AT2G01980 57 / 2e-08 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005934 [exp] 931 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 671 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 667 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 647 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 625 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 617 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 521 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 400 / 7e-136 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10039131 [exp] 129 / 6e-32 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134900 [exp] 715 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 694 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 693 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 692 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 579 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 136 / 2e-34 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040903 pacid=23179534 polypeptide=Lus10040903 locus=Lus10040903.g ID=Lus10040903.BGIv1.0 annot-version=v1.0 ATGGGATTGGGGGGATCGATTGGGGAACCAGATGCTGCCCCTGTACGTGCCATAACTCTATTTGTGGTACTCATCCTCGCTTGCATTGTGATTGGTCATC TTCTAGAGAAGAGCCGATGGATGAATGAGTCTACCACTGCCCTTCTGATTGGTGTCACTACTGGAATTCTTATCCTGGTGACCACAGAAGGGAAAAGCTC ACGGCTTTTGATATTCGACGAGGATCTTTTCTTCATATATCTCCTTCCACCCATCATATTCAATGCCGGGTTCCAAGTGAAAAAGAAACAGTTCTTCCGC AACTTTATGACGATCACATTGTTTGGAGCTGTTGGGACTTTAATATCTTTTGTTATCATATCCCTTGGAGCCAAGAAGTTATTTGATCTAATGGGCATTG ATTTCTTGGACACAAAGGACTATCTAGCACTGGGGGCAATTTTTTCAGCAACAGACAGTGTTTGCACCTTGCAGGTGCTTAGTCAGGAAGAGACCCCTTT GTTGTACAGTCTTGTTTTTGGAGAAGGTGTGGTCAATGATGCCACATCTGTCGTTCTTTTCAATGCGATCCAGCGCTTTGACCTCTCTCACATGACCTCA AGCATTGCACTACAGTTGCTTGGAAGCTTCTTATATTTGTTTTTCACAAGCACATTGCTTGGTGTCATCGTTGGATTATTGAGTGCTTACATCATAAAGA AGTTGTACTTTGGAAGGCATTCTACTGATCGTGAAGTTGCTCTGATGATGCTCATGGCTTATCTTTCATATGTTATGGCTGAATTGTTCAGTTTAAGTGG CATCCTCACTGTGTTCTTCTGTGGGATTGTCATGTCACATTATACATGGCATAATGTGACCGAAAGCTCAAGAGTTACCACAAAGCATGCTTTTGCGACA TTGTCATTCATTTCAGAAATATTCATATTCTTATACGTTGGTATGGATGCCCTGGATATTGAGAAGTGGAGAATTATTGGCAAGAGTCCTGGAACTTCAG CTGGTGTGAGCTCAGTATTGCTTGGGATGGTACTTTTGGGGCGAGCAGCTTCTGTCTTTCCCCTATCCTTTCTATCTAATTTAACTAAGAAGTCTGGCAG TGAGAAAATACGGTTCAAGGAGCAGATTATAATATGGTGGGCTGGACTCATAAGAGGGGCTGTTTCAATGGCACTTGCTTACAACCAGTTCACAATGGCG GGATACACGCAGCTACAAGGAAATGCCTTTATGATCACCAGCACCATTACAATTGTTCTGTTTAGTACAGTGGTGTTTGGATTGTTAACCAAACCGCTGA TAAGGTGGTTGTTACCACACCATTCTAGAAGCAGCAGCAGCTCAGAGCTAGAAGAAGAAAATGAGAAAGCTCTGTTTTTGCCTCTTCTTCTTGAGAGCAG CAGACAAGATCCGGCAGCAGAGACGAGTGCTGATAACATTCAGCGGCCGATGAGTCTACGCATGCTTCTGAGCAAGCCGACAAATACCGTGCATTACTAC TGGCGAAAATTTGACGACAGCTTCATGCGGCCTATGTTTGGAGGACGGGGATTCACTCCTTTCGTTCCTGGATCACCCATAGAAAGGAGCCTTCACGGAG GGAAGTAG
AA sequence Show only first row Show all	>Lus10040903 pacid=23179534 polypeptide=Lus10040903 locus=Lus10040903.g ID=Lus10040903.BGIv1.0 annot-version=v1.0 MGLGGSIGEPDAAPVRAITLFVVLILACIVIGHLLEKSRWMNESTTALLIGVTTGILILVTTEGKSSRLLIFDEDLFFIYLLPPIIFNAGFQVKKKQFFR NFMTITLFGAVGTLISFVIISLGAKKLFDLMGIDFLDTKDYLALGAIFSATDSVCTLQVLSQEETPLLYSLVFGEGVVNDATSVVLFNAIQRFDLSHMTS SIALQLLGSFLYLFFTSTLLGVIVGLLSAYIIKKLYFGRHSTDREVALMMLMAYLSYVMAELFSLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT LSFISEIFIFLYVGMDALDIEKWRIIGKSPGTSAGVSSVLLGMVLLGRAASVFPLSFLSNLTKKSGSEKIRFKEQIIIWWAGLIRGAVSMALAYNQFTMA GYTQLQGNAFMITSTITIVLFSTVVFGLLTKPLIRWLLPHHSRSSSSSELEEENEKALFLPLLLESSRQDPAAETSADNIQRPMSLRMLLSKPTNTVHYY WRKFDDSFMRPMFGGRGFTPFVPGSPIERSLHGGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	0	1
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	1.0	0.8870
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	2.2	0.8567
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	5.5	0.8732
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	5.5	0.8803
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10009921 [exp]	6.7	0.8478
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	7.2	0.8632
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	8.4	0.8525
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	9.6	0.7986
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10011025 [exp]	10.4	0.7508
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	11.0	0.8333

Compare expression of checked genes

Lus10040903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.