Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03470 119 / 3e-31 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 105 / 2e-26 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 96 / 3e-21 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 96 / 3e-21 kinase interacting (KIP1-like) family protein (.1) AT2G30500 94 / 9e-21 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT4G02710 92 / 7e-20 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 91 / 1e-19 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 91 / 1e-19 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 90 / 2e-19 kinase interacting (KIP1-like) family protein (.1) AT5G58320 88 / 7e-19 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005933 [exp] 674 / 0 AT1G03470 110 / 7e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Lus10039359 [exp] 96 / 4e-21 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 93 / 3e-20 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 93 / 3e-20 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 93 / 3e-20 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 93 / 3e-20 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 93 / 3e-20 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 87 / 4e-18 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 86 / 6e-18 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207700 [exp] 132 / 2e-34 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1) Potri.014G135000 [exp] 127 / 2e-33 AT2G47920 129 / 4e-35 Kinase interacting (KIP1-like) family protein (.1) Potri.003G164200 [exp] 95 / 5e-22 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 97 / 7e-22 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 96 / 3e-21 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 94 / 1e-20 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.002G049600 [exp] 94 / 1e-20 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 93 / 2e-20 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 93 / 3e-20 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 91 / 1e-19 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10040904 pacid=23179571 polypeptide=Lus10040904 locus=Lus10040904.g ID=Lus10040904.BGIv1.0 annot-version=v1.0 ATGACGATTGCGAATCTGACGATGAGGAACGAAACTAACTCACACAAGTGGTGGTTGAATGACAGTAACCATGCCTCCACTCGCTCTCCATGGCTACAGT ATTCCCTTGGTGAACTAGAACGGAAAACAACGGCGATGCTGAAAGTGATCGAGCAAGATGCAGATTCTTTTGCTCAGCGGGCAGAGATGTACTACAAGAA ACGACCGGAGCTAATCAACATGGTTGAGGACTTTTACAGGACACATCGTTCTTTAGTGGAGGAGTATGATCAGCTTAAGTCCGAAACTAGAGGGAGCCGA CGTCGCTTACTGTCTCTAACCTCTTCACTTTCGGTTGACTTTGAGCGTGGGAACCGGCCAGCAATGAGCATGATGACTGGTAATCAGGCTTGCGACTGCA AATCAACTATGAGCAGGATGAGTGATGACCATCATCAAGCCTTCGACTGCAAATCCACAATGAGTGGTGCAACGGGTGATTATCAAGCTTACGACTTCAA ATCGACACTGAGTGGGATGGAAGATCATTGCAAAGCCTCTTATGACTGTGAGTCTACAATTAGCGGGATGTCTGATCATCTTCAACCCTCCTATGACTGC AAATCAACAACCAGCCGCTCTGACATGTCCGAGCACGAGGACTCTGCTGCAGAATCCGAAGTTGACGACCCTGAGCTTGAAGAGGATGGAATTCCAGAGG TACTGGACGAAGCAGAACAAAATAGTAGTTTCGAGAAAGCTGCTGAAGAGATGCAGAGAGAATATGAGGTGCGTTTTGAATCTCTGAATGAAGAAATGAA GACGTTGAAGGAAGAAGCTGAACAGCTGAAAGAGGAGAACAGAGTCCAGAAGGAAGAGCTGTGGCAGAAAGATGAGGAGAAGAGAGAAGTAATCAGACAG CTGAGCTTAGGTATGGAGATGCTGAGGTCTGAGAATATGGAATTGAGGAAGAAGCAGCAATCTTCCTTCCATGCTGAGAGAAGAAGAAGCCCTGCTGGCG TTGGTTTTGAGTTTGGGAAACTGAAAGACACAATTTTCACAAAGCTTTTCCATGGCTCTCCAGCACCCAGGGTTATAATTGCAGCTCCCCAGATCCGAGT CTGA
AA sequence Show only first row Show all	>Lus10040904 pacid=23179571 polypeptide=Lus10040904 locus=Lus10040904.g ID=Lus10040904.BGIv1.0 annot-version=v1.0 MTIANLTMRNETNSHKWWLNDSNHASTRSPWLQYSLGELERKTTAMLKVIEQDADSFAQRAEMYYKKRPELINMVEDFYRTHRSLVEEYDQLKSETRGSR RRLLSLTSSLSVDFERGNRPAMSMMTGNQACDCKSTMSRMSDDHHQAFDCKSTMSGATGDYQAYDFKSTLSGMEDHCKASYDCESTISGMSDHLQPSYDC KSTTSRSDMSEHEDSAAESEVDDPELEEDGIPEVLDEAEQNSSFEKAAEEMQREYEVRFESLNEEMKTLKEEAEQLKEENRVQKEELWQKDEEKREVIRQ LSLGMEMLRSENMELRKKQQSSFHAERRRSPAGVGFEFGKLKDTIFTKLFHGSPAPRVIIAAPQIRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	0	1
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	2.8	0.9607
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	3.5	0.9635
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	5.1	0.9625
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10033915 [exp]	5.8	0.9486
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	7.7	0.9616
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	10.0	0.9598
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	10.4	0.9594
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	11.0	0.9587
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	12.8	0.9548
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	13.0	0.9550

Compare expression of checked genes

Lus10040904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.